PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG234500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 866aa    MW: 97065.4 Da    PI: 4.8169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG234500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Pavir.3NG234500.1.p  8 GVWKNTEDEILKVAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.823257IPR017930Myb domain
SuperFamilySSF466891.2E-13363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-16561IPR009057Homeodomain-like
SMARTSM007173.5E-14655IPR001005SANT/Myb domain
PfamPF002491.8E-11853IPR001005SANT/Myb domain
CDDcd001671.38E-111053No hitNo description
PfamPF118315.4E-37342539IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKV AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKD  60
ENYEPNDDPR KLRPGEIDPN PESKPARPDP VDMDGDEKEM LSEARARLAN TRGKKAKRKA  120
REKQLEEARR LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKQPP PGFYDIVGED  180
RSVEHVQFPT TIDELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAILQA NKLNDPEAVT  240
RRSKLMLPPP QISDHELEEI AKMGNAGDPG LTEELGEGSI ATRTLLANYS QTPKLGMTPL  300
RTPQRTPAGK GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPH GHDFGLTPKG  360
TPFHDELRIN EAVEMQDGTK LELRRQAELR RSLRSGFASI PQPKNEYQIV MPSITENENE  420
EAEEKIEEDM SDRLAREKAE EEARQEALLR KRSKVLQRSL PRPPAASELL RLLSMIMQNI  480
LLDEKTQKEK KKGNKRQQNG GSLVPEIDDF EEAELQEAGS MVEEEIQYLR VAMGHENGSF  540
EDFVKAHDAC QEDLMFFPTN NTYGLASVSG NAEKISALPN KFEIVKKRMD DEAKKASRLE  600
QKIKLLTQGY QVRAGKQWSQ VQDTFKQMNT ASTELECFQE LQKQEHLAAS YRILNLTEEV  660
NKQKALEQTL QCCYGDLLSG FRRIQGQLEE HNRQLKIQEE IEAENRAQAE EVAARDCAAE  720
EEERKSRSLE EEGQTNIATD GEAAGSKVTT EDQMDVDNRN GDEEFVGPIP PAPDTEGDKD  780
EVTIKENTSN VQSTDCASTD GGADKTGPGK PEGQDKADDA MAVDAGPQEE GKDEPATVGA  840
SVNEGNTSVS FEQAVSNEDN GMAPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-15626783792Cell division cycle 5-like protein
5xjc_L1e-15626783792Cell division cycle 5-like protein
5yzg_L1e-15626783792Cell division cycle 5-like protein
5z56_L1e-15626783792Cell division cycle 5-like protein
5z57_L1e-15626783792Cell division cycle 5-like protein
5z58_L1e-15626783792Cell division cycle 5-like protein
6ff4_L1e-15626783792Cell division cycle 5-like protein
6ff7_L1e-15626783792Cell division cycle 5-like protein
6icz_L1e-15626783792Cell division cycle 5-like protein
6id0_L1e-15626783792Cell division cycle 5-like protein
6id1_L1e-15626783792Cell division cycle 5-like protein
6qdv_O1e-15626783792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135154KRRELKAAGIDTRHRKRKRK
2149154RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.189690.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG234500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4589620.0AF458962.1 Zea mays CDC5 protein (CDC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807045.10.0cell division cycle 5-like protein isoform X2
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2S3HEW70.0A0A2S3HEW7_9POAL; Uncharacterized protein
STRINGSi021096m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]