PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG222100.1.p
Common NameMYB46A
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 419aa    MW: 44379.1 Da    PI: 6.7572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG222100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-142875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+lv +  + G g+W+ +ar   + R++k+c++rw +yl
  Pavir.3NG222100.1.p 28 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNADLQRCGKSCRLRWINYL 75
                         678*******************************************97 PP
2Myb_DNA-binding52.11.5e-1681124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
  Pavir.3NG222100.1.p  81 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 124
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3782375IPR017930Myb domain
SuperFamilySSF466896.25E-2826122IPR009057Homeodomain-like
SMARTSM007178.7E-102777IPR001005SANT/Myb domain
PfamPF002493.1E-122875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-222982IPR009057Homeodomain-like
CDDcd001672.35E-83175No hitNo description
PROSITE profilePS5129425.33976130IPR017930Myb domain
SMARTSM007179.6E-1680128IPR001005SANT/Myb domain
PfamPF002496.1E-1581124IPR001005SANT/Myb domain
CDDcd001672.63E-1183123No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2583131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MRKPEGPAAA NSCNAGAAAA AAAAKLRKGL WSPEEDEKLV AYMLRSGQGS WSDVARNADL  60
QRCGKSCRLR WINYLRPDLK RGAFSPQEEE LIVSLHAILG NRWSQIAARL PGRTDNEIKN  120
FWNSTIKKRL KNSSSASSPA ATDCASPEPN SKVAGFDVSG AASCPDLAGL DHQDGGHHHH  180
HAMVTTGLWM VDSSSSTSSS TPPMQGRPPS AMAAAVARSY GGLLPLPDQL RGGMAADASS  240
AAGFFHGHAA PFKHQAVASL HGGYYGSAPH HHGMMATMEG GGGCFMRGEG LFGVPPLLEA  300
MSAQDRDHDG QTLMASSGGN NSNPKNNSSN NTTEATATTT TTVSNNESNI TDNNNTKENI  360
NTMSGGLVNS SSSNVAAVYW EGPHQQQYMS RNVMHGDWDL EELMKDVSSL PFLDFQVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28261305108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.188850.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG222100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750940.0KT075094.1 Panicum virgatum secondary wall-associated MYB domain-containing protein (MYB46A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808414.10.0myb-related protein 330-like
TrEMBLA0A0K1TPH10.0A0A0K1TPH1_PANVG; Secondary wall-associated MYB domain-containing protein
STRINGPavir.J11191.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-64myb domain protein 46
Publications ? help Back to Top
  1. Zhong R, et al.
    Functional Characterization of NAC and MYB Transcription Factors Involved in Regulation of Biomass Production in Switchgrass (Panicum virgatum).
    PLoS ONE, 2015. 10(8): p. e0134611
    [PMID:26248336]