PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG202900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 427aa    MW: 46356.2 Da    PI: 4.7901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG202900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-13223269455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h + ErrRR+++N+ f  L++l+P+      +K++Ka+iL +++ ++k+L+
  Pavir.3NG202900.2.p 223 SHVMSERRRREKLNEMFIVLKSLIPST-----RKVDKASILAETIAHLKELE 269
                          899***********************8.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-17168IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.599219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-14222273No hitNo description
SuperFamilySSF474593.01E-17222285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16223280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-15225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTYAFRPGQG LPGKSLARNE HVWLRNAHLA DTKTFPRALL AKTVVCIPLM DGVLELGTTD  60
SVLENPDLEP NSCPSTDDDT GEATDIIVFE DVDHNASSME PMMISDANLE EVSCLEIDEL  120
YNLCEGLDVQ ALEDDWIGTD DEAPPSPEPA LATDDGDHAL ISTNGSRFSS SFKAWTRPES  180
DRRAAKMLKK VVSGGAWASG DGGDGSRARG AATTQEESGV VKSHVMSERR RREKLNEMFI  240
VLKSLIPSTR KVDKASILAE TIAHLKELER RVQELESSKE LISIPRPAAE RRHDDEVVVV  300
GARKAATPGR GAKRKKKGSD SELDAAGDGQ MAEQHWVRPN DGRSNVISIA VGDKEVLLDV  360
QCRWEERLMA RVFDAVKSLR LDIVSVQSST LDGLMGLKVR AQFASSAAVA PGMITEALQE  420
AISSRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232ERRRRE
2228233RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG202900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808676.10.0anthocyanin regulatory R-S protein-like
SwissprotP135261e-115ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A2T7EH790.0A0A2T7EH79_9POAL; Uncharacterized protein
STRINGPavir.Cb00833.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.33e-49bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]