PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG202900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 540aa MW: 58947.2 Da PI: 4.7486 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.6e-13 | 336 | 382 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + ErrRR+++N+ f L++l+P+ +K++Ka+iL +++ ++k+L+ Pavir.3NG202900.1.p 336 SHVMSERRRREKLNEMFIVLKSLIPST-----RKVDKASILAETIAHLKELE 382 899***********************8.....8****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.0E-44 | 20 | 181 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.599 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-14 | 335 | 386 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-17 | 335 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-10 | 336 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-16 | 336 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-15 | 338 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MALSASPVQE EPQPGNEQFR NHLAAAVRSI NWSYAIFWSV SSTGPAGVLT WKDGFYNGEV 60 KTRKVTSSTS EMTADQLALQ RSQQLRELYE PPRPIAALSP EDLGDTEWFY VVCMTYAFRP 120 GQGLPGKSLA RNEHVWLRNA HLADTKTFPR ALLAKTVVCI PLMDGVLELG TTDSVLENPD 180 LEPNSCPSTD DDTGEATDII VFEDVDHNAS SMEPMMISDA NLEEVSCLEI DELYNLCEGL 240 DVQALEDDWI GTDDEAPPSP EPALATDDGD HALISTNGSR FSSSFKAWTR PESDRRAAKM 300 LKKVVSGGAW ASGDGGDGSR ARGAATTQEE SGVVKSHVMS ERRRREKLNE MFIVLKSLIP 360 STRKVDKASI LAETIAHLKE LERRVQELES SKELISIPRP AAERRHDDEV VVVGARKAAT 420 PGRGAKRKKK GSDSELDAAG DGQMAEQHWV RPNDGRSNVI SIAVGDKEVL LDVQCRWEER 480 LMARVFDAVK SLRLDIVSVQ SSTLDGLMGL KVRAQFASSA AVAPGMITEA LQEAISSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5t0f_A | 4e-20 | 11 | 181 | 1 | 184 | Transcription factor MYC3 |
5t0q_A | 4e-20 | 11 | 181 | 1 | 184 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 345 | ERRRRE |
2 | 341 | 346 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG202900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808676.1 | 0.0 | anthocyanin regulatory R-S protein-like | ||||
Swissprot | P13526 | 1e-169 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | A0A2T7EH79 | 0.0 | A0A2T7EH79_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00833.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 4e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG202900.1.p |
Publications ? help Back to Top | |||
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