PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3NG199300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 677aa MW: 74417.4 Da PI: 7.699 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.3e-24 | 151 | 252 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++a+e+ +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F Pavir.3NG199300.3.p 151 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL-- 238 99*****************************555555669************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+v+v+r+ Pavir.3NG199300.3.p 239 RGENGELRVGVRRA 252 449999*****985 PP | |||||||
2 | Auxin_resp | 110.5 | 1.7e-36 | 277 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F+++Y+Pr+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e++++Gt+vg+ ++dp+ W +SkWrsLk Pavir.3NG199300.3.p 277 AWHAVNTGSMFTIYYKPRTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQKFTGTIVGIGASDPSGWADSKWRSLK 359 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.26E-41 | 147 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-40 | 147 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.08E-22 | 149 | 251 | No hit | No description |
PROSITE profile | PS50863 | 11.73 | 151 | 253 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-23 | 151 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-22 | 151 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.6E-33 | 277 | 359 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 677 aa Download sequence Send to blast |
MAAAAADGGG GGGGGGGGPE AAGGGGGGKD ALFVELWKAC AGPLSSVPPL GEKVYYFPQG 60 HIEQVEASTN QLAEQQGTPL YNLPWKIPCK LMNIELKAEP DTDEVYAQLT LLPDKKRDEN 120 TTTTVESDDP EEEEVPNAPP ATNEQLRIHS FCKTLTASDT STHGGFSVLR RHADECLPPL 180 DMSQHPPNQE LVAKDLHGVE WRFRHIFRGQ PRRHLLQSGW SVFVSAKRLV AGDAFIFLRG 240 ENGELRVGVR RALRHQTTIP SSVISSHSMH LGVLATAWHA VNTGSMFTIY YKPRTSPAEF 300 VVSRDRYYES LKRNYSIGMR FKMRFEGEEA AEQKFTGTIV GIGASDPSGW ADSKWRSLKV 360 RWDEASSVPR PERVSAWQIE PAVSPSPVNP LPPRFKRSRS NVNASPPIMP NVTREVASKV 420 MPDSQQNSLP RAMHSQGRTQ LTSQYRDSSD LKSAQDLTMW SKGIEQERNN ISAQTKLSLE 480 GWTQTRRPEG YNQPLSAFQP LKDAQNPLCS FPSQLSGNRS RNWDTIDSHY PVQQANHNMS 540 PGTLSLMPHN NGFRMDQQMN LSMPGAPHPQ RAEIAKFSGK SAFTPLQGHG IDQCSSDWFG 600 HIKPQPLVIE NDGQKTKGTS FKLFGFPLGS LEKSEPLVSP PSVAYDGKQT SPSERNQLGI 660 IEVDDCSDTS KTVKTV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-171 | 25 | 386 | 12 | 359 | Auxin response factor 1 |
4ldw_A | 1e-171 | 25 | 386 | 12 | 359 | Auxin response factor 1 |
4ldw_B | 1e-171 | 25 | 386 | 12 | 359 | Auxin response factor 1 |
4ldx_A | 1e-171 | 25 | 386 | 12 | 359 | Auxin response factor 1 |
4ldx_B | 1e-171 | 25 | 386 | 12 | 359 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.1871 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3NG199300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT066544 | 0.0 | BT066544.1 Zea mays full-length cDNA clone ZM_BFb0026K11 mRNA, complete cds. | |||
GenBank | JX428505 | 0.0 | JX428505.1 Zea mays subsp. mays clone pUT3103 ARF28 ARF type transcription factor mRNA, partial cds. | |||
GenBank | KJ726806 | 0.0 | KJ726806.1 Zea mays clone pUT3124 ARF transcription factor (ARF28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806224.1 | 0.0 | auxin response factor 24-like | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | A0A2S3HDY2 | 0.0 | A0A2S3HDY2_9POAL; Auxin response factor | ||||
STRING | Pavir.Cb00753.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62000.4 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3NG199300.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|