PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG187500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 183aa MW: 18875.7 Da PI: 11.6763

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG187500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5e-05	39	85	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + rr R+r+ ++eL +lP+ + +s++ + i+ Av +k L Pavir.3NG187500.1.p 39 RDVQRRLRARVSALYAELGAMLPSlP---TSRRATQEKIVDAAVARVKAL 85 6678******************66...9999*********988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.33E-6	32	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.756	33	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-4	35	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MAAAPAGGLP LELSLDTVTA PPAATAAESA VERRRRRVRD VQRRLRARVS ALYAELGAML 60 PSLPTSRRAT QEKIVDAAVA RVKALEDTAA ALESCRGAPR SGREVALSRG TVTVSARLPA 120 PEPAGALRRV VEAFERRGAR VLVATMARHG GGEGGAVVVT VTAAAAAPEV VEMIRADIAS 180 IN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG187500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808654.1	2e-62	uncharacterized protein LOC112886855
TrEMBL	A0A3L6T2P3	2e-69	A0A3L6T2P3_PANMI; Uncharacterized protein
STRING	Pavir.J14592.1.p	1e-117	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31

Link Out ? help Back to Top
Phytozome	Pavir.3NG187500.1.p