PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG175100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 540aa MW: 58498.7 Da PI: 7.5085 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.7e-11 | 98 | 123 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++++GtC++G +CkF+H+ Pavir.3NG175100.2.p 98 PGEPDCSYYLKFGTCRFGIKCKFNHP 123 5789*********************8 PP | |||||||
2 | zf-CCCH | 25.4 | 2.4e-08 | 250 | 271 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e+C++++ G Ck+G Ck+ H Pavir.3NG175100.2.p 250 EECKYYSTPGGCKFGTACKYLH 271 89******************** PP | |||||||
3 | zf-CCCH | 33.2 | 8.5e-11 | 296 | 320 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++rtG Ck+ +CkF+H+ Pavir.3NG175100.2.p 296 GEKECPFYMRTGSCKFATNCKFHHP 320 7899********************9 PP | |||||||
4 | zf-CCCH | 22.6 | 1.9e-07 | 442 | 468 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Cky +C+F+H++ Pavir.3NG175100.2.p 442 PGQPECQHFVKSGFCKYRMKCRFHHPR 468 5789*********************96 PP | |||||||
5 | zf-CCCH | 24.5 | 4.6e-08 | 488 | 513 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C F+H++ Pavir.3NG175100.2.p 488 DQPVCTYYGRFGVCKYGPACMFNHPF 513 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.5E-5 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-8 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-5 | 102 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.343 | 246 | 274 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 246 | 273 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 250 | 271 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 252 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-7 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 297 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-4 | 300 | 319 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 441 | 468 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 441 | 469 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 486 | 514 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0057 | 486 | 513 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 487 | 514 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-5 | 488 | 513 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MADAEANTQP PDAAESPIAS LSPSSVGAAD ADAIEKQLAG LGIAVAGGGG FPEPSGWDDV 60 PVPVAVGGGD EVAGEKVRGP PPAPAGAADG KVRFPRRPGE PDCSYYLKFG TCRFGIKCKF 120 NHPSRKKKSS RARGSGSSGS GSNSSSNKTS SPDDDQAPRE EYEGLVPDIS DSVTFHDKES 180 SSNSGNHRKT SNEVIDIKKG RMESKEKISE ELEKGVYFKK LDETNITNQK ILKGVKDKRK 240 ETFLEGSVQE ECKYYSTPGG CKFGTACKYL HREGKEGKAE VEKVELNFLG LPLRPGEKEC 300 PFYMRTGSCK FATNCKFHHP DPSNVASKEP VLEHENGDNP QQSAQGPSQP SVPIWPEQRA 360 LNEQHVPFLA PAPSYSAGMI PPQGMYPSPD WTGYHQVPVN PYYPPGVPFP PFPAPHMNHP 420 MYKAADIPGH QQLPSDEYPE RPGQPECQHF VKSGFCKYRM KCRFHHPRLC QPAPLSGLSP 480 IGLPIKPDQP VCTYYGRFGV CKYGPACMFN HPFNFGPPVP AAGPPLPGQY HPTHGNFTV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10178 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG175100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807655.1 | 0.0 | zinc finger CCCH domain-containing protein 65-like isoform X1 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A2T7EFS5 | 0.0 | A0A2T7EFS5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01040.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG175100.2.p |
Publications ? help Back to Top | |||
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