PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG175100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 542aa MW: 58774 Da PI: 7.5085 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.7e-11 | 98 | 123 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++++GtC++G +CkF+H+ Pavir.3NG175100.1.p 98 PGEPDCSYYLKFGTCRFGIKCKFNHP 123 5789*********************8 PP | |||||||
2 | zf-CCCH | 25.4 | 2.4e-08 | 250 | 271 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e+C++++ G Ck+G Ck+ H Pavir.3NG175100.1.p 250 EECKYYSTPGGCKFGTACKYLH 271 89******************** PP | |||||||
3 | zf-CCCH | 33.2 | 8.6e-11 | 296 | 320 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++rtG Ck+ +CkF+H+ Pavir.3NG175100.1.p 296 GEKECPFYMRTGSCKFATNCKFHHP 320 7899********************9 PP | |||||||
4 | zf-CCCH | 22.5 | 1.9e-07 | 444 | 470 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Cky +C+F+H++ Pavir.3NG175100.1.p 444 PGQPECQHFVKSGFCKYRMKCRFHHPR 470 5789*********************96 PP | |||||||
5 | zf-CCCH | 24.5 | 4.6e-08 | 490 | 515 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G CkyG+ C F+H++ Pavir.3NG175100.1.p 490 DQPVCTYYGRFGVCKYGPACMFNHPF 515 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.5E-5 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-8 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-5 | 102 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 246 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.343 | 246 | 274 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 250 | 271 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 252 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-7 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-5 | 297 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 300 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 443 | 471 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 443 | 470 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0057 | 488 | 515 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 488 | 516 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 489 | 516 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-5 | 490 | 515 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MADAEANTQP PDAAESPIAS LSPSSVGAAD ADAIEKQLAG LGIAVAGGGG FPEPSGWDDV 60 PVPVAVGGGD EVAGEKVRGP PPAPAGAADG KVRFPRRPGE PDCSYYLKFG TCRFGIKCKF 120 NHPSRKKKSS RARGSGSSGS GSNSSSNKTS SPDDDQAPRE EYEGLVPDIS DSVTFHDKES 180 SSNSGNHRKT SNEVIDIKKG RMESKEKISE ELEKGVYFKK LDETNITNQK ILKGVKDKRK 240 ETFLEGSVQE ECKYYSTPGG CKFGTACKYL HREGKEGKAE VEKVELNFLG LPLRPGEKEC 300 PFYMRTGSCK FATNCKFHHP DPSNVASKEP VLEHENGDNP QQSAQGPSQP SVPIWPEQRA 360 LNEQHVPFLA PAPSYSAGMI PPQGMYPSPD WTGYHQFQVP VNPYYPPGVP FPPFPAPHMN 420 HPMYKAADIP GHQQLPSDEY PERPGQPECQ HFVKSGFCKY RMKCRFHHPR LCQPAPLSGL 480 SPIGLPIKPD QPVCTYYGRF GVCKYGPACM FNHPFNFGPP VPAAGPPLPG QYHPTHGNFT 540 V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10178 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG175100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807655.1 | 0.0 | zinc finger CCCH domain-containing protein 65-like isoform X1 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A2T7EFS5 | 0.0 | A0A2T7EFS5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01040.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 4e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG175100.1.p |
Publications ? help Back to Top | |||
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