PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG173000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20498.3 Da PI: 6.6219 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.4 | 8.4e-37 | 20 | 120 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfpa+qp+++a vh +FG+sn +++l++lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ + Pavir.3NG173000.1.p 20 RCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNATRVLQSLPVQERGRAADTMAAEARWRVQDPVYGSTGVIDRLQQEIRAV 109 6***************************************************************************************** PP DUF260 91 kaelallkeel 101 ++ela+++++l Pavir.3NG173000.1.p 110 QHELATTRAQL 120 ******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.244 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-36 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEVADHHQDY GGGGSSIPRR CAACKYLRRR CAPGCVLAPY FPASQPRRYA DVHAVFGTSN 60 ATRVLQSLPV QERGRAADTM AAEARWRVQD PVYGSTGVID RLQQEIRAVQ HELATTRAQL 120 AVHARAAMAP PLGTQPMPPS LLLPPPPQPL AAAAAAAVEV VHAGAHGVAV QEEDEALLMD 180 PEEFLDLDGR L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-33 | 21 | 124 | 12 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-33 | 21 | 124 | 12 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG173000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683529.1 | 8e-76 | LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 8e-36 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | K3YMP0 | 3e-80 | K3YMP0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Cb01140.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 4e-38 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG173000.1.p |