PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG159500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 624aa    MW: 72516.2 Da    PI: 8.3002
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG159500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.19.1e-2126117190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+Y    GFsvrks+ + +++++e t r++vCs++g++ee+  k   k+rr+r  tr+gC ak+++ +++ +g+w+++++  eHn +
  Pavir.3NG159500.1.p  26 QFYNTYTLGKGFSVRKSYVEWKSEHTELTLRRYVCSRQGYHEEKYVKkGIKKRRPRDITRVGCPAKFVIALDRsTGQWYMKNFIDEHNYP 115
                          6*****************99999*****************99987663679999*****************999**************99 PP

                 FAR1  89 la 90 
                          la
  Pavir.3NG159500.1.p 116 LA 117
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1926117IPR004330FAR1 DNA binding domain
PfamPF105514.7E-33223315IPR018289MULE transposase domain
PROSITE profilePS509669.569500540IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MADLESLLEY NEIVRKIFAI KDKGFQFYNT YTLGKGFSVR KSYVEWKSEH TELTLRRYVC  60
SRQGYHEEKY VKKGIKKRRP RDITRVGCPA KFVIALDRST GQWYMKNFID EHNYPLASAD  120
LSCLLHSHRK ISDAQKAEIV ELGYGGYEKV GYTSRDLYNF CHLYNQDIIT NGDAQIVISH  180
LKERQNRDSE FFFKYMTDGK GHVQGMFWCD TQCMLDYTTF GDVIIFDSTY KTNRYNLPLM  240
PFIGVNHHYR TVLFGCGIIS HENTDSYVWL LKTFTEANAQ KHRISMITDG DLAMQRAISV  300
VWPNSPHRLC GWHIELNLVL NVHNDTLKGA FRVFLYDLCS IEEIERKWQV FLAANKVKED  360
SWLYQMYEVR QTWCAAYHVG HCFLGLRSNQ RSKSMNSRLQ MKLDGKMTLL EMVQHYEICL  420
TKVRRNEADD DAKALQSAPF TEPDALVLEI NAKEKFTPIV FKAKVQFSVE AAKKCSLIEI  480
LGGDDTTEHI VGKRDRDIMY YVKCELTEEV NQKRIFCSCR KLQSLRTPCS HIFYVLGLRD  540
ESKLLDCCVL ERWTMGAKRA FSTIWKNAMY DYSPTLLRFR ELRNLSLAAA FIASRSTEAY  600
EWTKRVLEQE DAVIVPNTGA NEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG159500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Cb01092.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-74FAR1-related sequence 5