PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG154100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 40718.4 Da PI: 5.1933 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 129 | 180 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++ge Pavir.3NG154100.1.p 129 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYGE 180 79*****999.**********8...2.489************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.03E-30 | 129 | 187 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 129 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 130 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.1E-34 | 130 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 130 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-32 | 131 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MTVDQKAMPM QAQALQPGRT FGAEGSTVVL GSIRTIGGRA LRSNEYELSV EQKPQGDAPP 60 MASNLCRKKR PRRSRDGPTS VAAVIQRWAE HNKQLEHGAE GTKRARKAPA KGSKKGCMKG 120 KGGPENTQCG YRGVRQRTWG KWVAEIREPN RVNRLWLGTF PTAEDAARAY DEAARAMYGE 180 VARTNFPRQS AATSSQVAPA ATSAQVAPAA VGSLLPSTSC ESTTTSNHSD IASTALKPEV 240 SDISSSLKVE DTVVTEAGSH RSEVISGSSV QHEDHPNTQA IAPNVVDKEV FEPLEPIIAN 300 LPEGEDDGFD IEEMLRMMEA DPQNKGGVDA GIGQPFYLDG LDSSVLESML QSEPQPYSMS 360 GEPDMFLAGF ESPGFFEGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 131 | 187 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-15 | 131 | 189 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.245 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG154100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810002.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X2 | ||||
Swissprot | Q5W6R4 | 6e-83 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A368QLQ3 | 0.0 | A0A368QLQ3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Cb01298.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11515 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 2e-32 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG154100.1.p |
Publications ? help Back to Top | |||
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