PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG123000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 295aa    MW: 29866.2 Da    PI: 8.4325
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG123000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702199.88.5e-62892482154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstk 90 
                          +sg+a+C+dCGnqakk+Cah+RCRtCC+srgfdC+thv+stWvpaa+rrer q + a+    a     aa+k++r   ++++ ++ s+t+
  Pavir.3NG123000.1.p  89 GSGAATCHDCGNQAKKGCAHSRCRTCCNSRGFDCETHVRSTWVPAARRRERLQLAGASPPPPAP----AAAKKPRLAcQTSTMTTNSRTS 174
                          57889**********************************************9888777655543....4455555542556777788888 PP

               DUF702  91 lssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          +s+a+++++l+tss          lP++v+ +avfrcv+v+svddg  e+aYq+av+i+Gh+f+G+Lyd+G+++
  Pavir.3NG123000.1.p 175 TSNATTPRSLDTSSshqdasfkdnLPRQVRGPAVFRCVQVTSVDDGGGEVAYQAAVTINGHLFRGLLYDHGADT 248
                          999999999999888999999999***********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-5592247IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.6E-2594136IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.5E-22199245IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLVVAPAGSF HHQRAGGASA ADDPVFPLIA AAQRTLVDAD AASGKPSAAG AIQFWHPEPQ  60
AGDLAAADGS RGKKALAMLD QGRGGAGSGS GAATCHDCGN QAKKGCAHSR CRTCCNSRGF  120
DCETHVRSTW VPAARRRERL QLAGASPPPP APAAAKKPRL ACQTSTMTTN SRTSTSNATT  180
PRSLDTSSSH QDASFKDNLP RQVRGPAVFR CVQVTSVDDG GGEVAYQAAV TINGHLFRGL  240
LYDHGADTDG RAADAVQLGT SDLHLGSASA AAANLCSGAS APLILGGLGY GNTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG123000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390921e-114BT039092.1 Zea mays full-length cDNA clone ZM_BFb0370H22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962238.11e-156protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_022680709.11e-156protein LATERAL ROOT PRIMORDIUM 1
TrEMBLK3Z8B11e-154K3Z8B1_SETIT; Uncharacterized protein
STRINGPavir.Cb01442.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-39Lateral root primordium (LRP) protein-related