PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG121400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 415aa    MW: 45429.3 Da    PI: 9.2192
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG121400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.3e-1773132155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Pavir.3NG121400.1.p  73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 132
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1273132IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1773142IPR016177DNA-binding domain
SMARTSM003806.2E-2574146IPR001471AP2/ERF domain
PROSITE profilePS5103219.83674140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1574141IPR001471AP2/ERF domain
PRINTSPR003674.3E-57586IPR001471AP2/ERF domain
PRINTSPR003674.3E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MASPNPDAAG LQSVAAAGAG EGSSSSFGAV AGAIVTAGEQ APRRALAVRK ERVCTAKERI  60
SRMPPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDDEEAAA  120
RAYDLAALKY WGAGTQINFP VSDYARDLEE MQMISKEDYL VSLRRKSSAF SRGLPKYRGL  180
PRQLHNSRWD TPLGHLLGND YLNLSCGKDI MLDGKFAGSF ALERKIDLTN YIRWWLPRKT  240
RQSDTSKAEE IADEVRAIES SMQQTEPYKL PSLGLCSPSK PSSAGLSACS ILSQSDAFKS  300
FMERSTKLSE ECTLSKEIVE GKAVASVPAT GHDTAAVNIN MNELLVQRAT YSMAPVMPTP  360
MKSTWSPADP PVDPLFWSNF VLPSSQPVTM ATITTTTTFA KNKVSSSDPF QSQE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.32470.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG121400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402580.0BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds.
GenBankBT0540580.0BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds.
GenBankBT0557190.0BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds.
GenBankEU9668900.0EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds.
GenBankKJ7275920.0KJ727592.1 Zea mays clone pUT5452 AP2-EREBP transcription factor (EREB171) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808533.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-107AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2S3HCG60.0A0A2S3HCG6_9POAL; Uncharacterized protein
TrEMBLA0A2T7EEC00.0A0A2T7EEC0_9POAL; Uncharacterized protein
STRINGSi021952m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-103AP2 family protein