PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG109800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 411aa    MW: 44935.7 Da    PI: 8.8955
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG109800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.1e-1770129155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Pavir.3NG109800.1.p  70 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 129
                          57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-1770139IPR016177DNA-binding domain
PfamPF008471.4E-1270129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-1671138IPR001471AP2/ERF domain
PROSITE profilePS5103219.83671137IPR001471AP2/ERF domain
SMARTSM003806.2E-2571143IPR001471AP2/ERF domain
PRINTSPR003674.2E-57283IPR001471AP2/ERF domain
PRINTSPR003674.2E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MASPNPDAAA GLQSVAAAGA GEGGSSSSLG AVAAGEQAPR RVLAVRKERV CTAKERISRM  60
PPCAAGKRSS IYRGVTRHRW TGRYEAHLWD KSTWNQNQNK KGKQVYLGAY DDEEAAARAY  120
DLAALKYWGA GTQINFPVSD YARDLEEMQM ISKEDYLVSL RRKSSAFSRG LPKYRGLPRQ  180
LHNSRWDTSL GHLLGNDYLN LSCGKDIMLD GKFAGSFALE RKIDLTNYIR WWLPKKTRQS  240
DTSKAEEIAD EVRAIESSMQ QTEPYKLPSL GLCSASKPSS AGLSACSILS QSDAFKSFME  300
RSTKLSEECT LSKEIVEGKA VASAPATGHD TAAVNINMNE LLVQRATYSM APVMPTPMKS  360
TWSPVDPSVD PLFWSNFVLP SSQPVTMATI TTTTFAKNEV SSSDPFQSQE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.32470.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG109800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402580.0BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds.
GenBankBT0540580.0BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds.
GenBankBT0557190.0BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds.
GenBankEU9668900.0EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808533.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-108AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2S3HCG60.0A0A2S3HCG6_9POAL; Uncharacterized protein
TrEMBLA0A2T7EEC00.0A0A2T7EEC0_9POAL; Uncharacterized protein
STRINGPavir.Ca01410.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-104AP2 family protein