PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG101100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 675aa    MW: 74784.4 Da    PI: 9.3053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06126149226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          k ++C+f+ + G+C++G +C++ H+
  Pavir.3NG101100.1.p 126 KAVPCKFYVQ-GQCHHGLNCRYLHD 149
                          5689**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15124151IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4124150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7125149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4126149IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4126149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNRSVCKECP RPNAIEGSPE SPWNQSHRSI IRSRSRSPER RWRDWVSEEP VLPFRHFAAD  60
RWGRAVPIPQ RDYHFTLQGN DIGEGILYRG ASWPYSHGVH SHEIRESSRA RGHLDSSNDR  120
RLKQRKAVPC KFYVQGQCHH GLNCRYLHDS ALETEMGLCV PVAAPVHTSA HNWYPHHSAP  180
QNQMELSTPV AVSASAHVLS GYGRGHLNSQ GIFKTIAKDE HNGLQLNYAQ RSQNYVFPSE  240
DIVSQQPQLL IPGRSSENGI YIDKGQNSHE TNGIVGVKNG MQAAHLATQK KLINQEQQIA  300
WKNSGQIEQS QEAVHPIHEV PSHLLTTHLP NATASWPWNS RMHQSNFLVH PKRPGEFVVP  360
QAGVNVPALS LQGQSFSQEA YAIPVPDASS DNGHSFNVNG QIPQNLGAAV HAGGSKEISG  420
IPKNDQDSDA QSMQNTKNFQ PVGVNMQSQR QNLQKVSDVP YSRSVGRVGG SIYHNTAVSE  480
EAHIINPDLA PSTGKALLTP SPIGKRFSQR NRDPRLVSKS SSAPPSVPPI QQEAAAISVP  540
SAAPPSVPPV QQEAAISVPS GKIHTSNITT RDDTTHPVVS LSVEVTEHAA ARSNFKIALT  600
NFVRQQIRKT WHSGHLTKED YKSIVRNVVK KVIDKEKTIP DTSEKVDEYL RDFRGSIDRF  660
IKDDFDHRNL TFIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG101100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809616.10.0zinc finger CCCH domain-containing protein 55-like isoform X2
TrEMBLA0A3L6SXG20.0A0A3L6SXG2_PANMI; Uncharacterized protein
STRINGPavir.J07100.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443