PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG098600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 431aa MW: 43138.7 Da PI: 6.319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG098600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.5e-12	212	257	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pavir.3NG098600.1.p 212 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 257 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.11E-13	205	261	No hit	No description
SuperFamily	SSF47459	9.29E-17	205	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-16	209	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	212	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MQPSGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG TKSPWELSEG AEDAAVQAAF 60 GDDSSALLVS RLRQHQIGGD VKSPSSSSPV MLQLSDLHRH GGGLAGAGAE ESAGFSPLPL 120 FTDRSAPARE EMEGGFRSPN SAQGGDHSLF NGFGMHGAAA VQPQFGQGGG SVSPQSLGGP 180 AVSGGATTPA GGAAPPRQVR QRARRGQATD PHSIAERLRR ERIAERMKSL QELVPNANKT 240 DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAGLAPLVAS MSSEANSNGG GSNSGGGGAK 300 GSAATKANGS GGGENGGLRV AENQVAKMME EDMGTAMQYL QGKGLCLMPI SLASAISSAT 360 SSTSLLSRPP PVLRHPAASA SPAPPGQLHD GSNGFAAANA ATSPASASSA GGGGDDPRST 420 KDAVCGGGKQ *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MQPSGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG TKSPWELSEG AEDAAVQAAF  60
GDDSSALLVS RLRQHQIGGD VKSPSSSSPV MLQLSDLHRH GGGLAGAGAE ESAGFSPLPL  120
FTDRSAPARE EMEGGFRSPN SAQGGDHSLF NGFGMHGAAA VQPQFGQGGG SVSPQSLGGP  180
AVSGGATTPA GGAAPPRQVR QRARRGQATD PHSIAERLRR ERIAERMKSL QELVPNANKT  240
DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAGLAPLVAS MSSEANSNGG GSNSGGGGAK  300
GSAATKANGS GGGENGGLRV AENQVAKMME EDMGTAMQYL QGKGLCLMPI SLASAISSAT  360
SSTSLLSRPP PVLRHPAASA SPAPPGQLHD GSNGFAAANA ATSPASASSA GGGGDDPRST  420
KDAVCGGGKQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG098600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062076	2e-60	BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBank	KJ727938	2e-60	KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812266.1	0.0	transcription factor bHLH82-like isoform X1
Swissprot	Q9ZUG9	1e-71	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A3L6PF50	0.0	A0A3L6PF50_PANMI; Transcription factor bHLH82
STRING	Pavir.J04712.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-33	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Pavir.3NG098600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]