PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG097800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 96aa MW: 10958.6 Da PI: 7.0709 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.3 | 4.9e-08 | 41 | 78 | 53 | 89 |
FAR1 53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +raet ++C+ ++ + ++k +g+++vt+l leHnH+l Pavir.3NG097800.1.p 41 VPRAETGIHCQVRMGLVMDKnKGNYRVTDLILEHNHTL 78 57999*********9998888***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.7E-5 | 41 | 78 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MEENREGLLS SLLPQVGMEF NTIDEAWMFW IRYGVKKALS VPRAETGIHC QVRMGLVMDK 60 NKGNYRVTDL ILEHNHTLHL PQTSHLMASQ SASYW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG097800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210441 | 5e-42 | AC210441.1 Oryza glaberrima clone OG_BBa0001E03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302769.1 | 5e-38 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A2T7D7F0 | 1e-37 | A0A2T7D7F0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8KUY9 | 2e-35 | A0A2T8KUY9_9POAL; Uncharacterized protein | ||||
STRING | OS10T0571900-00 | 9e-31 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG097800.1.p |