PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG068500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 357aa    MW: 39489.7 Da    PI: 9.72
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG068500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.36e-072242481741
                          HHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeae 41 
                          A+rsR RK+++i+eLe++v++L++e
  Pavir.3NG068500.1.p 224 AQRSRVRKLQYIAELERRVQSLQTE 248
                          89********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-5213272IPR004827Basic-leucine zipper domain
CDDcd147033.82E-14214264No hitNo description
SuperFamilySSF579597.5E-6223266No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-7224266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMANGRLQKQ ALLPPRSPFP AAAAAAPHAE LGPIARPRDA HHRHGHQRTS SESFLADEQP  60
SWLDDLLDEP ETPARAHGRP GHRRSSSDSF ALFEGGGGAA AGIHDNVLDG MRGGGGGQLA  120
SWAGAPEFFP EPTSFGRPQG RPWESRQMYR QGGGMPIPGR EKNGGRHGPS SSFGDLEHGH  180
VPNGVDRKGH GDAAHDQRIG AERKEGLRHS QSEADTKRAK QQYAQRSRVR KLQYIAELER  240
RVQSLQTEGI EVTAEMDFLG QQNIMLDLEN KALKQRLESL SQEHLIKRYQ QEMFEREIGR  300
LRSLFQQQQQ QQHVPQQQAP THSRSNSRDL DSQFANLSLK HSDPNSGRDA VSGLRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.338481e-169leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG068500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441963.20.0uncharacterized protein At4g06598
TrEMBLA0A3L6T2U00.0A0A3L6T2U0_PANMI; Uncharacterized protein
STRINGPavir.J04853.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33103666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-63bZIP family protein