PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG067100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 418aa    MW: 46477.8 Da    PI: 6.5053
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG067100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC77.22.2e-2428126499
                NF-YC   4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                           fw+k+   i++ +df++ ++P++r+kk++ a +   m+s ++P +l+kace+f+ el++r+w+ a++ +r+ +  sdia+++++ + +d
  Pavir.3NG067100.1.p  28 EFWKKKqeeIKEIKDFHEYAFPMSRLKKVVCAKKGKMMMSFDTPSFLTKACEIFVQELSFRAWMCANSHQRKIILDSDIAEVIASLKSYD 117
                          69*98845566778888999********************************************************************** PP

                NF-YC  91 flvdivprd 99 
                          fl d+   d
  Pavir.3NG067100.1.p 118 FLNDVLHID 126
                          ****98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001256.3E-1211109IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.04E-1532129IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.2E-1848123IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MKEMDHPIDI HPSSKKSLSE SEQWLKEEFW KKKQEEIKEI KDFHEYAFPM SRLKKVVCAK  60
KGKMMMSFDT PSFLTKACEI FVQELSFRAW MCANSHQRKI ILDSDIAEVI ASLKSYDFLN  120
DVLHIDQDEH SSTPLKSAKV CHHSLINKSS TSHLISSGQY KKLESIAQST RYSPHIRISS  180
PLPLIDDCPM TLPLPCLLQE ASPLMPTTIS PPLTMSETNA HMTYMGGGTG FIQNGISKNT  240
TTLVPPRAQR NITNTCYMST IPSSYCVGYA GTSNVDAQNG AAAYYHILPS SLLFSPPSQR  300
ANNSGPIAIG IESNHIKPKV AHIRSNIDAH STTNAISGIN LEATINANDV QHQHGSLEVV  360
STTKLSEDNK NINWDEVDMA DDSLLIEFWE DVMMNKDITI QEIPSHMPEL QGSHHGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG067100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684300.11e-126uncharacterized protein LOC111257969
TrEMBLA0A3L6RG100.0A0A3L6RG10_PANMI; Uncharacterized protein
STRINGPavir.Cb01904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.13e-16nuclear factor Y, subunit C1