PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG066300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28493.8 Da PI: 9.9061 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.3 | 1e-23 | 42 | 88 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 r en r vtfskRr+g+lKKA ELSvLC+a+v viifsstgk+++ Pavir.3NG066300.1.p 42 RTENPVHRRVTFSKRREGLLKKARELSVLCGADVGVIIFSSTGKVHD 88 67999****************************************97 PP | |||||||
2 | K-box | 27.6 | 1.2e-10 | 117 | 201 | 13 | 98 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ +q ++ L+ ei Lq+ +R G + e++ l L+ Le+ Le + Rs K++++ +i+ l++ke l+++n+ L++k Pavir.3NG066300.1.p 117 RSQVTEQWISLLRHEIGLLQHGLRSTGGGE-ENMRLDRLHVLEKGLELWYCQTRSAKMQIMQHEIQVLKNKESTLKSANEILQQKE 201 45667788999***********87766655.9****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-33 | 33 | 92 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-27 | 33 | 108 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.74 | 33 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.55E-33 | 35 | 110 | No hit | No description |
PRINTS | PR00404 | 2.7E-23 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-22 | 44 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-23 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-23 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.6E-11 | 118 | 200 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.78 | 118 | 207 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MCVRQAGACL QLVPYLLQGQ SKVKVICRQR ETMVRGKVQM RRTENPVHRR VTFSKRREGL 60 LKKARELSVL CGADVGVIIF SSTGKVHDLA TNGNMQSLVE RYQSIAARGK MESKNLRSQV 120 TEQWISLLRH EIGLLQHGLR STGGGEENMR LDRLHVLEKG LELWYCQTRS AKMQIMQHEI 180 QVLKNKESTL KSANEILQQK EDILKAANEI LQNKANEQNQ FMSNCSVFSG SSYSTHYDAN 240 ESCLFTIYSF * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.41888 | 2e-38 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedling roots. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG066300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807982.1 | 1e-145 | MADS-box transcription factor 33-like isoform X1 | ||||
Swissprot | Q2QW55 | 2e-77 | MAD33_ORYSJ; MADS-box transcription factor 33 | ||||
TrEMBL | A0A2T8KH90 | 1e-143 | A0A2T8KH90_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01900.1.p | 1e-110 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 4e-45 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG066300.1.p |