PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG049300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 580aa    MW: 63340.8 Da    PI: 8.8738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG049300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14425470454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+      +K++Ka+iLe Av +I +L
  Pavir.3NG049300.1.p 425 SHVEAERQRREKLNKRFCALRAIVPNI-----TKMDKASILEDAVTHITDL 470
                          799***********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3654217IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.95E-16419475No hitNo description
SuperFamilySSF474591.26E-17420485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.072421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17425484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-12425470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MKTEIEEVSI GGFWNEEGKA LCASVLGLDA FTYLTKCGGA ISEGLVAASV LADLQSKLHN  60
LVEADGQSLR WKYAIFWQLA RTKSGAVVLG WGDGSCREPY DGKIVFATSV GAGDASSVTR  120
QRVRKRVLQR LHTAFAGADE EDYAPGIDQV TDTEAFFLAS MYFSFPRHVG GPGKVFAAGR  180
PLWIPNNDLK VSPGNYCYRG FLANAAGFKT IVLVPFKAAL QTIRSLFLGT HSTSTASEKH  240
EDNISVQISP GSTKIFGKDL SISQPSAIKA ADSSKVDGGS RDEQKSSSGD SMLLPNLRKG  300
LQNFTWSQAR GLNSQQQKFA NGILVVTSEA GQSGDGSVPG TGVSSFQLQK PQQILTQPPL  360
QPRVPMQIDF RVGSSSKFGV LISQKEMLDG GNGDIDGLFK DEREDRQPRK RERKPTNGRE  420
EQPLSHVEAE RQRREKLNKR FCALRAIVPN ITKMDKASIL EDAVTHITDL KKKLEKMEAE  480
REKLLELGKV DSNEQTTMPE VDIQVVHGEI LVRVVSQIDN HPIKKVLQAF EEAEVRIGES  540
KVTTNDGTVV HSFVIKSPSS EQHTRNKLLA SISNATRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-21418481264Transcription factor MYC2
5gnj_B2e-21418481264Transcription factor MYC2
5gnj_E2e-21418481264Transcription factor MYC2
5gnj_F2e-21418481264Transcription factor MYC2
5gnj_G2e-21418481264Transcription factor MYC2
5gnj_I2e-21418481264Transcription factor MYC2
5gnj_M2e-21418481264Transcription factor MYC2
5gnj_N2e-21418481264Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227670.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG049300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805866.10.0transcription factor bHLH13-like
RefseqXP_025805867.10.0transcription factor bHLH13-like
RefseqXP_025805868.10.0transcription factor bHLH13-like
TrEMBLA0A2S3H6X80.0A0A2S3H6X8_9POAL; Uncharacterized protein
STRINGPavir.Ca00449.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.37e-54bHLH family protein