PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG044400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 959aa MW: 105932 Da PI: 5.2528 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.7 | 3.6e-20 | 48 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +av+ + g++Wk+Ia++++ gRt+ qc +rwqk+l Pavir.3NG044400.3.p 48 KGNWTAEEDDILRKAVETYKGKNWKKIAECFP-GRTDVQCLHRWQKVL 94 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.1 | 2.4e-19 | 100 | 146 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v++lG++ W+tIa+ ++ gR +kqc++rw+++l Pavir.3NG044400.3.p 100 KGPWSKEEDEIIIQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 146 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.2 | 2.6e-15 | 152 | 194 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ + ++ gRt++ +k++w+ Pavir.3NG044400.3.p 152 KDAWTQEEEIKLIHAHQTYGNK-WAELTKFLP-GRTDNAIKNHWH 194 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.179 | 43 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.73E-16 | 45 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-18 | 47 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 48 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.88E-16 | 50 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 50 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 32.04 | 95 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-31 | 97 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-18 | 99 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 100 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-15 | 102 | 146 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-26 | 112 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.607 | 151 | 201 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-14 | 151 | 199 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 152 | 194 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 153 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.35E-11 | 154 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 959 aa Download sequence Send to blast |
MTSEGLMTSK GTEASAPDVP PDEGVRREPR KGRLPNGRIT GPARRSSKGN WTAEEDDILR 60 KAVETYKGKN WKKIAECFPG RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IIQMVNKLGP 120 KKWSTIAQAL PGRIGKQCRE RWHNHLNPGI NKDAWTQEEE IKLIHAHQTY GNKWAELTKF 180 LPGRTDNAIK NHWHSSVKKK IDSYRASGLL AQLQGLAPIE YTTCGLSVDS SSATTNQISE 240 DSGLNVFREV EDSTDLSQSS FAKGSCSQEE QTDVALGSHL NVHESLCQDG TNADNAASAL 300 PEMHHQLSTS DMDQDKHFQD DLSQGMDLDK HLQLQQEFSQ GMDLHVDIDE VPNNFVITDS 360 QASNELTGQF QDTQIMHSSE NDGVSLIPYA VTPCVSILPS VPGCENNINM MCEVGVKNGD 420 CFQSEQWQNT SIQPISHPSE AASNFSAPLY PSLQTSEPAT MMGDPLYYQS SVTSLPPSFI 480 SSDGASNASD VKFETSRYPV SHQDLEIKTC HNSSGDPDQS SYISREGDRN RTSEPIDSIP 540 DSEKKQLVDL EQSCLEPTTY IGKEALSSHG DSVLREKENA GALCYEPPCF ASFEVPFVSC 600 ELVTSSDLPE YSPLGIRELM RSSLNFPTPV RLWGSPTRDG SPDAVLKNAA KSFVCTPSIM 660 KKRPRDLSSP SPDIRNEKRL NTEKDCGRSV MSSTRIGKSF MDTPDDFVDL VSPTRKTAFQ 720 KKLKLSQENI ENLNQITDQG EHEGNAKHSA GILTDSSVNN LNTPKHGPNY ESQRLNTSAK 780 AWSNSKDIIF SRSKPSELLV EKSIPCIDAD YEYVNILADT PGIKRGLESP SAWKSPFFTP 840 FQDAYFMSPA SRAFDALGLV KQINEQSAAA LEEAHEVLAS GSPWKRHCKE NNDKENTAWK 900 NEVGTSKPPS KPMAEGRVLD FNECSTPVRM KEDKKVDLAL GGSASSPVGS SYLRMNVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-66 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-66 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18406 | 1e-106 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the root quiescent center (PubMed:15937229). Accumulates in division zone of primary root tips and emerging lateral roots. Also present in floral organs in young flower buds. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed specifically in proliferating stage of leaves (PubMed:26069325). {ECO:0000269|PubMed:15937229, ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, cotyledons and leaves, especially in vascular tissues, and in flowers. {ECO:0000269|PubMed:17287251}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG044400.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808581.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_025808582.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Swissprot | Q94FL9 | 1e-98 | MB3R4_ARATH; Transcription factor MYB3R-4 | ||||
TrEMBL | A0A2S3H6W6 | 0.0 | A0A2S3H6W6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07395.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 2e-97 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG044400.3.p |
Publications ? help Back to Top | |||
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