PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG030500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 479aa MW: 52170.5 Da PI: 6.1695 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.2e-07 | 235 | 256 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Pavir.3NG030500.1.p 235 FCSICGKGFKRDANLRMHMRGH 256 6*******************98 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 353 | 367 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H Pavir.3NG030500.1.p 353 CGTSFSRKDKLFAHV 367 **************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-5 | 232 | 259 | No hit | No description |
PROSITE profile | PS50157 | 12.092 | 234 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 234 | 256 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.0E-6 | 235 | 285 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 236 | 256 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 71 | 283 | 316 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 37 | 321 | 343 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MDHSHHIYNQ SAANLCHQFG SDNPLLGMGI QQSFAPFTSP FGASSSTNIP HMDWNPATML 60 DNLTFIEEKI QQVKDVIRTM VDNGSQLPCC PGELAQQQQV VNADLTCLIV QLISTAGSLL 120 PSLKNSSFLS HPPAGHTGIV NHVGSSSSFV PNVTTISEEN EEMCSPEDYE ELFKGFTDGA 180 MEGDIEIDNV LTGEQDAKDG DEGGDAGMDG ESLPLGSYEL LQLEKDEILA PHTHFCSICG 240 KGFKRDANLR MHMRGHGDEY KSPAALAKPP RDASAEHEVV KRYSCPFVGC KRNKLHKNFQ 300 PLKTILCVKN HYKRSHCEKS YTCSRCHTKK FSVMADLKTH EKHCGREKWL CSCGTSFSRK 360 DKLFAHVALF QGHTPALPAE EAKTSLDQIG DLGSHQEPAK LPSSMGSSFM WGTSSGSDSV 420 LDIKGFDGCS DDFLSTANFG SFNFSFGPAD GFTGEPSGGS FPMMPSEHFQ NAQKKGKK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.251 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG030500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809367.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger protein STAR3-like | ||||
Swissprot | Q943I6 | 1e-142 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A2T7E5L8 | 0.0 | A0A2T7E5L8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01989.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-131 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG030500.1.p |
Publications ? help Back to Top | |||
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