PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG020000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 271aa    MW: 29619.1 Da    PI: 8.0206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG020000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.82.5e-2937133186
                          EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                          f+k ltpsdv+k++rlv+pk++ae++           g  +e++  l +ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+
  Pavir.3NG020000.1.p  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplgsaggvggGDGSEKGLLLAFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDV 126
                          99**********************************9555568889******************************************** PP

                          EEEEE-S CS
                   B3  80 vvFkldg 86 
                          v F++++
  Pavir.3NG020000.1.p 127 VCFERVR 133
                          ****664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-3931156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-2934135IPR015300DNA-binding pseudobarrel domain
CDDcd100175.43E-2835135No hitNo description
PROSITE profilePS5086312.95737149IPR003340B3 DNA binding domain
PfamPF023621.4E-2637133IPR003340B3 DNA binding domain
SMARTSM010198.6E-2337149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAMHHLAQGH PHAWPWGVTM YTNLHYHQHQ YEREHLFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLGSAGG VGGGDGSEKG LLLAFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKR  120
LDAGDVVCFE RVRGGLGVGD RLFIGCRRRG ESAAPTPTPP PPVRAPAPAL NPGEQQPWSP  180
MCYSTSGSSY PTSPASPYAY HSDMAHAGEA DAKSSGTPTA PSRKLRLFGV NLDCGPEPEP  240
EAEAATAMYG YLHQSPYAAV STVPNYWGSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-52321493113B3 domain-containing transcription factor NGA1
5os9_B5e-52321493113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.101530.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG020000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977350.11e-173B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-121Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLK3Y9F71e-172K3Y9F7_SETIT; Uncharacterized protein
STRINGPavir.Cb02052.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.27e-45B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]