PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG009100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 381aa    MW: 42643.7 Da    PI: 8.7046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG009100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS221.25.2e-6866358127374
                 GRAS 127 aLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhr 212
                           Ll+ +  R++gpp++R+T+v++    +++ l +++  L++ A++l++pf+f+  v  rle+l++++L    ++k gEa+a++++lq+hr
  Pavir.3NG009100.1.p  66 ELLHDFHGRQGGPPEVRLTVVHD----DNDYLANMRTLLSNEADKLNIPFQFSS-VIGRLETLDFSNLrntlDIKYGEAIAISCSLQMHR 150
                          599********************....9**************************.799999999988854447777************** PP

                 GRAS 213 ll...........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                          ll                                           + + ++++   ++L++v+ l+P+++ v+eq+a+hn+  F +rf+e
  Pavir.3NG009100.1.p 151 LLvvddkvscsgigqlqkmaniaqlkqmassvyspastlnypqtpSPQCKTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCDRFVE 240
                          ******************************************998666677778889********************************* PP

                 GRAS 260 aleyysalfdsleakl...preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                          al+yy+alfd+l+a +   pr ++er+ vEr++lg+ei+n++ ceg +r erhe+l++W + ++++GF  vpls +a  + +  l  +++
  Pavir.3NG009100.1.p 241 ALNYYAALFDCLHALVaanPRRADERARVERMILGEEIRNILVCEGVHRHERHERLSQWAMHMDRSGFDHVPLSFRAIWEGNQKLMSFGF 330
                          ************88761125566******************************************************************* PP

                 GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                           g + + es++l+l+W +r  +s+SaWr
  Pavir.3NG009100.1.p 331 SGCQSKVESDCLLLCWGSRHHYSISAWR 358
                          ***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.6861338IPR005202Transcription factor GRAS
PfamPF035141.8E-6566358IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MIGNLRREAN IDRGARYPSP QRPRSPSRGH HPGSNGAPAH ARPPPGWLWL SALSTCPAQP  60
PTHGSELLHD FHGRQGGPPE VRLTVVHDDN DYLANMRTLL SNEADKLNIP FQFSSVIGRL  120
ETLDFSNLRN TLDIKYGEAI AISCSLQMHR LLVVDDKVSC SGIGQLQKMA NIAQLKQMAS  180
SVYSPASTLN YPQTPSPQCK TPKLLASFLN AVRALKPNIM LVMEQDANHN ALLFCDRFVE  240
ALNYYAALFD CLHALVAANP RRADERARVE RMILGEEIRN ILVCEGVHRH ERHERLSQWA  300
MHMDRSGFDH VPLSFRAIWE GNQKLMSFGF SGCQSKVESD CLLLCWGSRH HYSISAWRPH  360
IGSASGSRDH MLVQPQRQIK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-15203358220375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG009100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826866.10.0scarecrow-like protein 3
TrEMBLA0A3L6Q0N90.0A0A3L6Q0N9_PANMI; Uncharacterized protein
STRINGPavir.J37722.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-69scarecrow-like 3