PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG003500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 189aa MW: 20553.3 Da PI: 8.586 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 148.5 | 6.2e-46 | 7 | 158 | 226 | 374 |
GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetl 312 +L++ + sPk+vv++eqea hn++sF +r++eal+yy+a +dsl+a +++ er+ vEr++lg+e++ v+ ega+rrerh +l Pavir.3NG003500.1.p 7 GFLSAARAASPKIVVLAEQEAGHNGASFRKRVAEALSYYAAAYDSLDAAAAAYRrpaAERAEVERAVLGEEVRGVLLREGARRRERHDRL 96 69********************************************777554434559******************************** PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++W +r+e aGF+ vpls+ a q lr++++ g + e+ g+++l+W++ pL+svSaWr Pavir.3NG003500.1.p 97 HQWARRMEVAGFRGVPLSYAALRQGVDTLRRCGVGGCESREHGGCMLLCWRSWPLYSVSAWR 158 *************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.924 | 1 | 138 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-43 | 7 | 158 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MPAALAGFLS AARAASPKIV VLAEQEAGHN GASFRKRVAE ALSYYAAAYD SLDAAAAAYR 60 RPAAERAEVE RAVLGEEVRG VLLREGARRR ERHDRLHQWA RRMEVAGFRG VPLSYAALRQ 120 GVDTLRRCGV GGCESREHGG CMLLCWRSWP LYSVSAWRPD RGSAYGVGSG YLSPSAPPDH 180 CFDEELMC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-17 | 16 | 159 | 241 | 379 | Protein SCARECROW |
5b3h_D | 4e-17 | 16 | 159 | 241 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG003500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805496.1 | 1e-105 | scarecrow-like protein 3 | ||||
Refseq | XP_025827469.1 | 1e-105 | scarecrow-like protein 3 | ||||
TrEMBL | A0A2S3ICA3 | 1e-104 | A0A2S3ICA3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RCR9 | 1e-105 | A0A3L6RCR9_PANMI; Scarecrow-like protein 3 | ||||
STRING | Pavir.J31854.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-17 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG003500.1.p |