PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG569000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 163aa MW: 17386.9 Da PI: 11.8943

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG569000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.1e-10	55	104	1	50
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e++ +r rrk++NRe+ArrsR+RK+ +ee + + L a N++L+ +l Pavir.3KG569000.1.p 55 EAAERRLRRKISNRESARRSRARKQRHLEEIRARGGRLRAGNRELAARLR 104 567799***************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.8E-8	50	114	No hit	No description
SMART	SM00338	3.6E-5	55	119	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.37	57	103	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-7	59	107	No hit	No description
PROSITE pattern	PS00036	0	62	77	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MAPQLPALSD PVLEAFLADI GFGLGPEPLD VTTTMTMAAT PPEEETSASA SAADEAAERR 60 LRRKISNRES ARRSRARKQR HLEEIRARGG RLRAGNRELA ARLRGARAAL VRLTNARLRA 120 EAGALGRRLE AARRAVELRQ IYAAASAGTG GLELQALASL IV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	78	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG569000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169702.1	7e-27	ocs element-binding factor 1-like
Refseq	XP_020183570.1	7e-27	ocs element-binding factor 1-like
TrEMBL	K3ZCP8	7e-54	K3ZCP8_SETIT; Uncharacterized protein
STRING	Pavir.Ca02895.1.p	5e-71	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19

Link Out ? help Back to Top
Phytozome	Pavir.3KG569000.1.p