PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG568100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 190aa MW: 20925.3 Da PI: 6.8622 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.1 | 5.1e-10 | 80 | 140 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e +r r+ +NR++A rsR K++ ++ L + v L + N L + l++ +++ + e+ Pavir.3KG568100.1.p 80 EERRRHRMVSNRLSAARSRMHKEQHLDDLCQQVSRLRGVNLHLLDHLSRTVRHCEDVHREN 140 668899**************************************99999999999877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-8 | 77 | 134 | No hit | No description |
SMART | SM00338 | 1.6E-7 | 78 | 142 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.0E-8 | 79 | 139 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.77E-9 | 82 | 134 | No hit | No description |
CDD | cd14702 | 5.22E-12 | 83 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MNMYDQAYFP QSFKPASAFH DAASLLAVDG SDMASIEPDT VVQEAAHLAG RNGSPSSGTG 60 SDGAAGSGYQ MNKVSLAAEE ERRRHRMVSN RLSAARSRMH KEQHLDDLCQ QVSRLRGVNL 120 HLLDHLSRTV RHCEDVHREN AWLRDEKAEL VKKLEQQLQS ATARENTIDH AAETSGGARI 180 EPKWGLVLQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG568100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973757.1 | 2e-43 | G-box-binding factor 1 | ||||
TrEMBL | A0A3L6RJ77 | 6e-49 | A0A3L6RJ77_PANMI; G-box-binding factor 1 | ||||
STRING | Pavir.J36629.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13600.1 | 2e-13 | basic leucine-zipper 58 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG568100.1.p |