PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG561900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 391aa MW: 40832.4 Da PI: 6.9093 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.5 | 3.3e-15 | 195 | 241 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN++f eL +++P + kK++Ka+iL Av+Y+++Lq Pavir.3KG561900.1.p 195 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 241 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.955 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-19 | 195 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-12 | 196 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-17 | 196 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-15 | 196 | 245 | No hit | No description |
SMART | SM00353 | 5.1E-17 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MDRHMEDSST FLQWAMNQLH HQHPSAAAAA AAASAYHDGA GAGDREAIFP SLHALRRGAG 60 QTQSSQQPVA ASVRVRDLTV QVDHLTNSSS SGDSPGAGDA MDHDAAAGWS PHTARSRTTG 120 LGGGGGGGNN WPVSWNFSAA SAQPTRESGG GGALPDAAVA ARVVQLASAG RRGSSSAAPP 180 AATAAASSSP GPVQDHIIAE RRRREKINQR FIELSTVIPG LKKMDKATIL GDAVKYVREL 240 QEKVKTLEED GAHSAGGSSI QSAVLVKKPC HHLPGDEAMA SSNGGGAGGV QLPEIEARLS 300 EKSVLLRIHC YNARGLLVRV ISEVEQMHLS ITHTNVMPFP ASTAIITITA KVEEGFTATV 360 DEIVRSINSV LHQHYSSSSE EKEDTKVDYC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 195 | 250 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 204 | ERRRRE |
2 | 200 | 205 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG561900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808672.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_025808673.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_025808674.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_025808675.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | A0A2T7EJP4 | 0.0 | A0A2T7EJP4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J30022.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG561900.1.p |