PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG547300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 290aa MW: 30658.5 Da PI: 6.8688 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108 | 1.4e-33 | 39 | 155 | 1 | 111 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesss 79 aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a ai+el+++ ss++a + +++++ Pavir.3KG547300.2.p 39 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAGAIDELPSLdcsfalpagasSSPPA--AGDDAEV 126 6899*************************************************************9999997754322222..2223333 PP TCP 80 ssasnsssgkaaksaakskksqksaasalnla 111 s++++s k++ + + ++++ +++a++++ Pavir.3KG547300.2.p 127 STSETS---KSSVLSLANGPTDNATTAAHQVN 155 332222...22222222222222222223333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.8E-33 | 41 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.375 | 42 | 100 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEEVGMELER TACKRPRAAL DGGTAAAAAW RTCRVARAAA GGKDRHSKVV TARGLRDRRV 60 RLSVPTAIQF YDIQDRLGVD QPSKAIEWLI RAAAGAIDEL PSLDCSFALP AGASSSPPAA 120 GDDAEVSTSE TSKSSVLSLA NGPTDNATTA AHQVNHAYNG GSFAELLHCS ANDSKPMQQP 180 TLAYYAAQLP SSHAAPVMSF ETMPQLAFLQ EQPHPAVGFD RGTLQSNVTV AAPLWPPSQH 240 ACFLQRFAAA PVDAAGLQFF LGGGTAPPPV TVNAEPRLQL WDFKQERKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-23 | 47 | 101 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-23 | 47 | 101 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG547300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810054.1 | 1e-177 | transcription factor PCF8-like | ||||
Swissprot | A2ZMR9 | 9e-94 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A3L6T289 | 0.0 | A0A3L6T289_PANMI; Transcription factor PCF8 | ||||
STRING | Pavir.Ca02949.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 5e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG547300.2.p |