PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG543200.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 454aa    MW: 47348.4 Da    PI: 7.0221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG543200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.5e-17269315455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++ +L+el+P++      K +Ka++L +A+eY+k Lq
  Pavir.3KG543200.4.p 269 VHNLSERRRRDRINEKMKTLQELIPHC-----NKTDKASMLDEAIEYLKTLQ 315
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-18262319No hitNo description
Gene3DG3DSA:4.10.280.101.2E-20262323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-20263324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.266265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-14269315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-18271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MTQYVPDWSS GMGDAFATFN GGDDDGLMEL LWCNGHVVMQ SQAPRKPARP EKVAAPAAAA  60
AAALDDEAAA WFQYPAEDAL ERDLFTELFG EAPAAGAGGS GRACKEEAGC AGEAAARRSG  120
TMMPPQPRKK ACPGDIGDVS DGAAARAAAA GGERAATATE AVESSMLTVG PSFCGSNHVQ  180
APRAPPPPGA AGKAGGRACD AATVTSSSMR PRSCTTRAGQ AGAAAHRSSK RRPSDATETE  240
DAEFQSADAT CELPAQKLTT AKRRRAAEVH NLSERRRRDR INEKMKTLQE LIPHCNKTDK  300
ASMLDEAIEY LKTLQLQLQM MWMGGGMAAA AAPVMFPAGV HQYMQRMVAS PHVASMPRMP  360
FLAPPAVQSP PGADPYAHYL AVDHLQPPPA AAAAPMGMGF YQQQQSPALP PPPPPAVPAT  420
SLPAATARTS PPDGTLHKKY ENCGKTEIQG ITS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262277RRRAAEVHNLSERRRR
2273278ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG543200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558766e-79BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805663.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A2S3HFD20.0A0A2S3HFD2_9POAL; Uncharacterized protein
STRINGPavir.Cb00224.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-26phytochrome interacting factor 3