PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG537300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 395aa    MW: 42698.9 Da    PI: 7.0457
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG537300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-1489126340
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+C+CkkskClk+YC Cfa+g++C+e C Ce C Nk 
  Pavir.3KG537300.1.p  89 CKTCSCKKSKCLKLYCVCFASGSHCTEACGCEPCLNKP 126
                          89**********************************96 PP
2TCR48.71.5e-15165200439
                  TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++C+Ckks ClkkYC+Cf+ g+ Cs +CkCedC+N 
  Pavir.3KG537300.1.p 165 RKCTCKKSGCLKKYCDCFQGGAGCSINCKCEDCRNP 200
                          79********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-987128IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.9888202IPR005172CRC domain
PfamPF036382.1E-1090125IPR005172CRC domain
SMARTSM011141.1E-15162203IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-11165199IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDAEEGAPKP PQPEPAGSEP DDARNTPPLP TPLPPPPAPA PAPAPVPAPA SEAAAAAAAP  60
ASAAVSPPAE ANGTSDRKKK RKAEDGEGCK TCSCKKSKCL KLYCVCFASG SHCTEACGCE  120
PCLNKPMQGV PRTPPVLPLK PVQTLEAGQE SVEQLIRSPM DLIRRKCTCK KSGCLKKYCD  180
CFQGGAGCSI NCKCEDCRNP FGRKVGVILE GKSALAAPVL NERNGAEVDS SDDEDDYYMN  240
RPLSPIPPSP VSRESSFQQE TLVGVEVQTM NGHLYPKPLT QVRPEPPSWQ LSRRPVEEAR  300
GEQWRFSRRP SEDGTSDAME ALAMAQRDKK PEIHMDRFSI PRCIEVMSAM ADLSPIEKSL  360
APDVFLDPSN REIFLSLSVD IRPIWLRRKM KSLV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.120440.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG537300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809474.10.0RNA-binding protein MEX3A-like
TrEMBLA0A2T7EJ290.0A0A2T7EJ29_9POAL; Uncharacterized protein
STRINGPavir.Cb00245.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-25TESMIN/TSO1-like CXC 2