PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG537000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 830aa MW: 90500.6 Da PI: 7.2674 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.7e-18 | 23 | 80 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L + + +++ +q+kvWFqNrR +ek+ Pavir.3KG537000.1.p 23 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 80 6789****************************************************97 PP | |||||||
2 | START | 166 | 2.6e-52 | 172 | 379 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +e++ vi +g g Pavir.3KG537000.1.p 172 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRHVEIVHVIPTGngG 260 68999*****************************************************.8888888888********************* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l++++++al++l+ Rdf+++Ry+ l +g++vi+++S+++ + p+ + ++Rae+lpSg+li+p+++g+s + +v+hvdl+++ Pavir.3KG537000.1.p 261 TIELIYMQTYALTTLAGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPSgpnAPTFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLNAK 350 ***************999****************************99999999************************************ PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 +++++lr+l++s + ++k++ a+l++ + Pavir.3KG537000.1.p 351 SVPEVLRPLYESPKILAQKMTAAALRHIR 379 ************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.24 | 17 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-15 | 19 | 85 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-16 | 21 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.53E-15 | 22 | 82 | No hit | No description |
Pfam | PF00046 | 9.3E-16 | 23 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-18 | 24 | 80 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.31E-6 | 74 | 113 | No hit | No description |
PROSITE profile | PS50848 | 27.813 | 162 | 362 | IPR002913 | START domain |
CDD | cd08875 | 7.00E-66 | 166 | 382 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.3E-23 | 170 | 354 | IPR023393 | START-like domain |
SMART | SM00234 | 1.2E-43 | 171 | 381 | IPR002913 | START domain |
Pfam | PF01852 | 2.4E-50 | 172 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.26E-37 | 172 | 382 | No hit | No description |
Pfam | PF08670 | 2.8E-39 | 686 | 828 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence Send to blast |
MAAVASRERL SPGAAPQVDT GKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRDCPILS 60 NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSRLVYDNG 120 YMKNQLHSPS VATTDTSCES VVTSSQHYQQ QNPAVPPPPQ RDANNPAGLL AIAEETLAEF 180 MSKATGTAVN WVQMVGMKPG PDSIGIIAVS HNCSGVAARA CGLVSLEPTK VAEILKDRPS 240 WYRDCRHVEI VHVIPTGNGG TIELIYMQTY ALTTLAGPRD FWTLRYTSGL DDGSLVICER 300 SLTQSTGGPS GPNAPTFIRA EVLPSGYLIR PCEGGGSMIY IVDHVDLNAK SVPEVLRPLY 360 ESPKILAQKM TAAALRHIRQ IAHESSGEIP FGAGHQPAVL RTFSQRLSRI LQLQSNSSPN 420 KLVGSHVSLS PFFSAIGGGI MCAKASMLLQ NVPPALLVQF LREHRSEWAD PGVDAYSAAS 480 LRANPYAVPG LRAGGFMGTQ VILPLARTLE HEESLEVIRL EGHGFSHDEV LMSRDMFLLQ 540 LCSGVDENAP GACAQLVFAP IDESFADDAP LLPSGFRVIP LDDKMDMPTA TRTLDLASAL 600 EVGSGAGLRA PSDASGACTT RSVLTIAFQF SFENHLRESV AAMARQYVRG VMASVQRVAM 660 AIAPSRLGSH IQLKHPHPPG SPEALALATW IGRSYRVHTG MEIRWSDTEG AENPLMPFWK 720 HSDAILCCSL KPPFTLKFAN SAGFDILETT MVNIQDMPLE AVLDDEGRKA LFTELPKIMQ 780 QGWAYLPGGV CRSSMGRQAS YEQAVAWKVV GDDGAPQGLA LMLANWTFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG537000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067483 | 0.0 | BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds. | |||
GenBank | HQ858784 | 0.0 | HQ858784.1 Zea mays clone UT1770 HB homeobox transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808876.1 | 0.0 | homeobox-leucine zipper protein HOX33-like | ||||
Swissprot | A2ZMN9 | 0.0 | HOX33_ORYSI; Homeobox-leucine zipper protein HOX33 | ||||
Swissprot | Q2QM96 | 0.0 | HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33 | ||||
TrEMBL | A0A2S3HFV4 | 0.0 | A0A2S3HFV4_9POAL; Uncharacterized protein | ||||
STRING | Si021201m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG537000.1.p |
Publications ? help Back to Top | |||
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