PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG535400.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LSD | ||||||||
Protein Properties | Length: 139aa MW: 14660.7 Da PI: 8.3742 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 51.4 | 1.8e-16 | 43 | 67 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ Pavir.3KG535400.4.p 43 CGQCQTVLMYPYGAPSVKCAICNFI 67 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.5E-12 | 40 | 69 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-14 | 43 | 67 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MPCSHHRATS RNGDGSTYLW WLPNIIDVYS QCNNLSSIAH VNCGQCQTVL MYPYGAPSVK 60 CAICNFITNI GGHQVPMVRP LPPALPASSG NSYNIPSTSA PTSQSQNVTV VVENPMTVDD 120 KGKLVSNVVV GVTTGGKK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7277 | 1e-166 | callus| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG535400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF314699 | 1e-136 | KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805780.1 | 8e-67 | protein LOL2-like isoform X1 | ||||
Swissprot | Q2QMB3 | 3e-48 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A3L6RCG1 | 2e-66 | A0A3L6RCG1_PANMI; Protein LOL2-like isoform X1 | ||||
STRING | Pavir.J37999.1.p | 5e-67 | (Panicum virgatum) | ||||
STRING | Pavir.J38598.1.p | 4e-67 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-15 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG535400.4.p |
Publications ? help Back to Top | |||
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