PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG535400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LSD | ||||||||
Protein Properties | Length: 209aa MW: 21987.6 Da PI: 8.5521 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.6 | 2e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGApsV+Ca+C++V Pavir.3KG535400.1.p 7 CHGCRSLLLYPRGAPSVCCAVCHAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 43.9 | 3.9e-14 | 75 | 99 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+r+A+ VRC++CdtV Pavir.3KG535400.1.p 75 CGGCQTLLMYTRNATTVRCSCCDTV 99 ************************9 PP | |||||||
3 | zf-LSD1 | 50.5 | 3.3e-16 | 113 | 137 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ Pavir.3KG535400.1.p 113 CGQCQTVLMYPYGAPSVKCAICNFI 137 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.0E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.2E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.3E-13 | 73 | 102 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.3E-11 | 75 | 99 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.2E-11 | 110 | 139 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-14 | 113 | 137 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHA VTTVPPPGSA SELWFLLVHN RTSKAHALAH 60 PAHEQKGMEM ARLICGGCQT LLMYTRNATT VRCSCCDTVN LVRPVSSIAH VNCGQCQTVL 120 MYPYGAPSVK CAICNFITNI GGHQVPMVRP LPPALPASSG NSYNIPSTSA PTSQSQNVTV 180 VVENPMTVDD KGKLVSNVVV GVTTGGKK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7277 | 0.0 | callus| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG535400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF314699 | 0.0 | KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805780.1 | 1e-120 | protein LOL2-like isoform X1 | ||||
Swissprot | Q2QMB3 | 3e-93 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A2S3HFC7 | 1e-118 | A0A2S3HFC7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EJ69 | 1e-118 | A0A2T7EJ69_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J37999.1.p | 1e-151 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-41 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG535400.1.p |
Publications ? help Back to Top | |||
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