PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG529200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 146aa MW: 16261.2 Da PI: 8.7753 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 42 | 78 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kg 34 rg+WT +Ed+ lv++++ +G g+W++ ar g ++ Pavir.3KG529200.1.p 42 RGPWTVDEDLTLVNYIACHGEGRWNSLARATGklaLN 78 89***************************99955554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.263 | 37 | 122 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.39E-12 | 39 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-18 | 40 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-8 | 41 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-6 | 44 | 118 | No hit | No description |
Pfam | PF13921 | 3.3E-9 | 45 | 131 | No hit | No description |
SuperFamily | SSF46689 | 2.39E-12 | 102 | 128 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 112 | 145 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MAEPQRTRSE SSSPGAPVEL DDDHGLPGGA AQDQEEQLEL RRGPWTVDED LTLVNYIACH 60 GEGRWNSLAR ATGKLALNKS ARTAAGHLHP WLIARAFHTH AGLKRTGKSC RLRWLNYLRP 120 DVRRGNITAD EQLLILDLHT RWGNR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG529200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069744 | 2e-54 | BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds. | |||
GenBank | KJ727638 | 2e-54 | KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810240.1 | 2e-62 | transcription factor JAMYB-like | ||||
Swissprot | Q2QZJ8 | 3e-40 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A2S3HEM3 | 5e-61 | A0A2S3HEM3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EI17 | 5e-61 | A0A2T7EI17_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RBX2 | 5e-61 | A0A3L6RBX2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Cb00499.1.p | 5e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 3e-38 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG529200.1.p |
Publications ? help Back to Top | |||
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