PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG523200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28195.1 Da PI: 8.1949 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.8 | 5.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss Pavir.3KG523200.2.p 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59 9***********************************************96 PP | |||||||
2 | K-box | 97.1 | 2.8e-32 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + ++ ++++ +qe+ kLk ++e Lqr+qR+llGedL +L+ eL qLe+q++k lk+iRs+K+++ll+++ +l++ke++lq++n+ L++ Pavir.3KG523200.2.p 81 AAPSSDEMQNNYQEYMKLKTRVEALQRSQRNLLGEDLAPLTTSELDQLESQVDKTLKQIRSRKTQVLLDELCDLKRKEHMLQDANMVLKR 170 44678899********************************************************************************** PP K-box 97 klee 100 kl+e Pavir.3KG523200.2.p 171 KLDE 174 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.132 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.23E-40 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 6.8E-30 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-28 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.442 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRGKVLLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS 60 SNLLKTLERY QRYIYASADA AAPSSDEMQN NYQEYMKLKT RVEALQRSQR NLLGEDLAPL 120 TTSELDQLES QVDKTLKQIR SRKTQVLLDE LCDLKRKEHM LQDANMVLKR KLDEVEAEAP 180 PRPQPQLPWQ GGSGDGTMVS DGPPQPEHFF QALESNPSLQ PTFHTMDMNQ QPVPAPGGSY 240 SPAWSAWMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-24 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-24 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-24 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-24 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves and at low levels in roots and spikelets (rice flower). {ECO:0000269|Ref.7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG523200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN661614 | 0.0 | JN661614.1 Panicum miliaceum panicle phytomer 2-like protein (PAP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796987.1 | 1e-166 | MADS-box transcription factor 34-like | ||||
Refseq | XP_025796988.1 | 1e-166 | MADS-box transcription factor 34-like | ||||
Swissprot | Q6Q9H6 | 1e-122 | MAD34_ORYSJ; MADS-box transcription factor 34 | ||||
TrEMBL | A0A2S3IHY4 | 1e-164 | A0A2S3IHY4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7C0Y0 | 1e-164 | A0A2T7C0Y0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00529.1.p | 1e-168 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 6e-82 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG523200.2.p |