PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG495700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 199aa MW: 23049.3 Da PI: 6.355 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 167.2 | 1.3e-51 | 2 | 188 | 187 | 373 |
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 e+++ e+L+++p+E+l+Vn+++q ++l+d+sv +es+rd L+ +++++P+ +++ + + +++ F++rf eal yysalfd l+++ p Pavir.3KG495700.1.p 2 ETIRAEDLNLDPEEVLIVNCIYQFKNLMDDSVLIESPRDVALNNIRKMRPHAFIHGIVNGSFSAPFFVTRFREALFYYSALFDVLDTTTP 91 78899************************************************************************************* PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 r+s++r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aG+k++pl+ ++++ ++ +++++ + + ++ ++++l++gWk+r Pavir.3KG495700.1.p 92 RDSNQRMLIEQNIFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKQLPLNPNIVQVVRDKVKECYHKDFVIDIDHHWLLQGWKGRI 181 *********************************************************************889****************** PP GRAS 367 LvsvSaW 373 L+++S W Pavir.3KG495700.1.p 182 LFAISTW 188 ******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.753 | 1 | 169 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-49 | 2 | 188 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
METIRAEDLN LDPEEVLIVN CIYQFKNLMD DSVLIESPRD VALNNIRKMR PHAFIHGIVN 60 GSFSAPFFVT RFREALFYYS ALFDVLDTTT PRDSNQRMLI EQNIFGRAAL NVIACEGTDR 120 VERPETYKQW QVRNQRAGLK QLPLNPNIVQ VVRDKVKECY HKDFVIDIDH HWLLQGWKGR 180 ILFAISTWVA NDDAGSYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-16 | 8 | 153 | 234 | 381 | Protein SHORT-ROOT |
5b3h_E | 1e-16 | 8 | 153 | 234 | 381 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.25004 | 0.0 | callus| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG495700.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807224.1 | 1e-141 | scarecrow-like protein 34 | ||||
Swissprot | O80933 | 1e-74 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2T7EIA2 | 1e-139 | A0A2T7EIA2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J10950.1.p | 1e-147 | (Panicum virgatum) | ||||
STRING | Pavir.J30860.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22289 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 5e-77 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG495700.1.p |