PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG494800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 338aa    MW: 34257.3 Da    PI: 8.8753
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG494800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.7e-38111168562
               zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s
  Pavir.3KG494800.1.p 111 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 168
                          679***************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3293164IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.385112166IPR003851Zinc finger, Dof-type
PfamPF027011.2E-31112166IPR003851Zinc finger, Dof-type
PROSITE patternPS013610114150IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVFSSLPIFL DPPNWGQMQM QQQQQPPLQC LLGGGGGGGG SDHHHLMPPP SGLAPLPGGP  60
ADTAASAPAG GNSSSSMQAP AGAGAGAQPR PVVSMAERAR LARVPLPEPG TLRCPRCDST  120
NTKFCYFNNY SLSQPRHFCK ACRRYWTRGG ALRNVPVGGG CRRNTKRSSK KSSRGGGAGA  180
TAATSSSSTT STSTTATTTS AAMAAAEAIA SMQAQLPHLG LPPAAAAAAL EASLEGYHHY  240
LPFQMQPQFL QQVGLHGYHF ADDGSGVLAD GFPRGVVASG LLAQLAAVKM EEHSSGGGGG  300
AVAAHEQSYW PGSTGGGGGW PAEFLSGFSS SSSGNVL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200620.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG494800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824190.0KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668091.11e-158dof zinc finger protein DOF2.2 isoform X1
SwissprotQ9M2U13e-42DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A317Y8M11e-163A0A317Y8M1_MAIZE; Dof zinc finger protein DOF5.1
TrEMBLB6U2U91e-163B6U2U9_MAIZE; Uncharacterized protein
STRINGPavir.Ca02598.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-39Dof family protein