PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG491200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 176aa    MW: 19675.1 Da    PI: 5.2854
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG491200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-16243548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Pavir.3KG491200.2.p  2 SPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                         899***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001679.20E-13143No hitNo description
SMARTSM007173.8E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129423.752147IPR017930Myb domain
PfamPF002493.9E-14242IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-12249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-19244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSPHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS  60
SSLTYQSCYP DTPSTIGVEG QELHGGSGCI TSILKGNPSD MDAYPMDQIW MEIEAPEVPS  120
GMGLDGGNDN ACSSLTAPLL PPTAWDYYPE ACWKMDEEIK MAPQFGYSEG VGPCF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.86070.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG491200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391311e-179BT039131.1 Zea mays full-length cDNA clone ZM_BFb0374B19 mRNA, complete cds.
GenBankBT0686401e-179BT068640.1 Zea mays full-length cDNA clone ZM_BFb0353K20 mRNA, complete cds.
GenBankHQ8586751e-179HQ858675.1 Zea mays clone UT1131 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808845.11e-119myb-related protein MYBAS2-like
SwissprotQ4JL766e-85MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A3L6T0P21e-119A0A3L6T0P2_PANMI; Myb-related protein MYBAS2-like
STRINGPavir.Ca02588.1.p1e-128(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.22e-34myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]