PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG488200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 287aa    MW: 30980.2 Da    PI: 6.8342
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG488200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.91.3e-091203655
              G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                         m+vk+Ltl+hvkSHLQ+YR 
  Pavir.3KG488200.1.p  1 MNVKDLTLAHVKSHLQMYRA 20
                         9******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-8120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNVKDLTLAH VKSHLQMYRA VKGTDRSCFA GHGQARDMAF LRRGAAGEVD GFDVFNSNSS  60
VNTATTFNND TARRSRSPSG EQQQRRRLDH QEAAVAACAW IRAHQRLQSC GSDELTLQPP  120
PCRLRPAADR LLTTTEEQCQ QQQGSKGGEQ DHLGEGGAVA VHHLADEQAR EKLPSSPPPP  180
HDHHHAGSGL FRWPSPANNT SSSGDDTVSS SERLQQRHYC SGGGGGGMGV RLAAVGLPAP  240
PPPSLEMSLG RQGWQMEQRV GDEFEFEFES SSPPAAPNEL TMLKCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG488200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805465.11e-122uncharacterized protein LOC112884302
TrEMBLA0A2T7EIQ01e-129A0A2T7EIQ0_9POAL; Uncharacterized protein
STRINGPavir.Ca02685.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.16e-09G2-like family protein