PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG487300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 139aa MW: 15416.5 Da PI: 9.2328 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 52.2 | 1.3e-16 | 26 | 55 | 6 | 35 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCka 35 +cprC s++tkfCy+nny+++qPr+fC+a Pavir.3KG487300.1.p 26 ERCPRCASRDTKFCYFNNYNTAQPRHFCRA 55 68**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.1E-12 | 26 | 61 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-9 | 28 | 52 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEAAAALHMQ SPVPLPLPPP AAAGRERCPR CASRDTKFCY FNNYNTAQPR HFCRASSPRR 60 CRPRCTTAAR RTCSCDTYTL VASDVKLAPD ASRHRSINEL SDHDHLSLLW PLLFRTRNID 120 KSFVSLSRAE LGVDQSGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG487300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.1 | 7e-11 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG487300.1.p |