PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG485200.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 224aa MW: 23807.8 Da PI: 11.0969 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.8e-31 | 79 | 134 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+peLH rFv a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Pavir.3KG485200.4.p 79 KARRSWSPELHCRFVAALQRLGGAQVATPKKIRQLMKVDGLTNDEVKSHLQKYRLH 134 689***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.435 | 76 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-16 | 76 | 137 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-28 | 77 | 137 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-25 | 79 | 134 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-7 | 81 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAFFVSGAFM PPALAGSPDD AAEKPAALPV PDLTLSSPAI DAACPAVSSA TSSAVTDGGA 60 ATTQRLLRQR QQQQAQPQKA RRSWSPELHC RFVAALQRLG GAQVATPKKI RQLMKVDGLT 120 NDEVKSHLQK YRLHTRRASP SDGGDLQALA ADLSAVPEQQ YTASQHSTSQ SVSPQGSLTA 180 DGVEPGHVGD RRGQLRRRRG EGRLVRELER LRRAAARTKA SSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-14 | 79 | 132 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 79 | 132 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 79 | 132 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 79 | 132 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.21855 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG485200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809801.1 | 3e-70 | transcription factor NIGTH1-like | ||||
TrEMBL | A0A3L6R6G7 | 1e-71 | A0A3L6R6G7_PANMI; Putative transcription factor GLK2 isoform X1 | ||||
STRING | Pavir.J16844.1.p | 1e-158 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-29 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG485200.4.p |