PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG485200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 250aa    MW: 26247.2 Da    PI: 10.6202
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG485200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.78.3e-31105160156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r+ W+peLH rFv a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYRl+
  Pavir.3KG485200.3.p 105 KARRSWSPELHCRFVAALQRLGGAQVATPKKIRQLMKVDGLTNDEVKSHLQKYRLH 160
                          689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.435102162IPR017930Myb domain
SuperFamilySSF466891.34E-16102163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-28103163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-25105160IPR006447Myb domain, plants
PfamPF002493.9E-7107158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSAQLWSCG SHDTSTAGTS SGAAAEPARE VSGAFMPPAL AGSPDDAAEK PAALPVPDLT  60
LSSPAIDAAC PAVSSATSSA VTDGGAATTQ RLLRQRQQQQ AQPQKARRSW SPELHCRFVA  120
ALQRLGGAQV ATPKKIRQLM KVDGLTNDEV KSHLQKYRLH TRRASPSDGG DLQALAADLS  180
AVPEQQYTAS QHSTSQSVSP QGSLTADGVE PGHVGDRRGQ LRRRRGEGRL VRELERLRRA  240
AARTKASSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-14105158154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14105158154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14105158154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14105158154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.218550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG485200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809801.16e-81transcription factor NIGTH1-like
TrEMBLA0A3L6R6G73e-82A0A3L6R6G7_PANMI; Putative transcription factor GLK2 isoform X1
STRINGPavir.J16844.1.p1e-154(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-29G2-like family protein