PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG485100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 435aa    MW: 45696.8 Da    PI: 9.4952
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG485100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.5e-31292346256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           r++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pavir.3KG485100.1.p 292 GRRCWSPELHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 346
                          69***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.6E-17288349IPR009057Homeodomain-like
PROSITE profilePS5129413.149288348IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-28288349IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-26291346IPR006447Myb domain, plants
PfamPF002496.5E-7293344IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MTLLPSGSSS SSSSSSRYKP RRHPHQQRAS SEHRPQPLAF PDVAGTDGAE AGPAAAMMAR  60
KEDHHHRHHL RALAARAVTD SLRAAAPRAA TPAERAARFE DCVRSLEAEK AKMEVFSREL  120
PISVQLVADV IEWLKEELAQ HRRPAPAPAP ELFAPVAPAA AKRKAAPEGA AVKAEADAND  180
KRSWMSSAQL WSCGSHDGST AGTNGAAAAA KPARKVSGAF MPPALASSPD DAAEKPAALP  240
VPDLTLSSPA MDAACTAAPS ATCSAVTDGG AAAQRLLRQR QHQQQQQQQR KGRRCWSPEL  300
HRRFVAALQR LGGAQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRA SPSSDGGDLQ  360
ASAGLWAAPE QQYTASQHST SQSGSPQGPL QLTVSSRALS ATAGDSCDGD EVEGGGSESY  420
GFGAQHGTTK ASSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-12291344154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-12291344154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-12291344154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-12291344154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.218550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG485100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616584e-52AY661658.1 Sorghum bicolor clone BAC 796all, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809801.11e-170transcription factor NIGTH1-like
TrEMBLA0A1E5VCU61e-169A0A1E5VCU6_9POAL; Myb family transcription factor EFM
TrEMBLA0A2S3HF011e-169A0A2S3HF01_9POAL; Uncharacterized protein
STRINGPavir.Ca02525.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-35G2-like family protein