PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG480900.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 540aa    MW: 62071.1 Da    PI: 7.2688
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG480900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.11.2e-085914338127
                  NAM  38 diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd.kevlskkgel...........vglkktLvfykgrapk 115
                          ++ +v+PwdLp +          F+  ++    g+ + r t+sgyWk++  +   + s++g +           +g+++tL fy   +++
  Pavir.3KG480900.3.p  59 RLAEVDPWDLPPR----------FTMPKE---PGSSSLR-THSGYWKEKEDEfIGIRSEGGGQgsssasgspcyKGVRRTLEFY---EHN 131
                          5556666666511..........232222...2445556.799****765531445555333356778899999**********...455 PP

                  NAM 116 gektdWvmheyr 127
                           +ktdWv+hey+
  Pavir.3KG480900.3.p 132 DTKTDWVIHEYS 143
                          578********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.06226173IPR003441NAC domain
SuperFamilySSF1019413.4E-1051173IPR003441NAC domain
PfamPF023652.1E-764143IPR003441NAC domain
PROSITE profilePS5080811.515234294IPR003656Zinc finger, BED-type
PfamPF028927.3E-6237279IPR003656Zinc finger, BED-type
SuperFamilySSF576671.67E-5238283No hitNo description
SMARTSM006149.0E-8238288IPR003656Zinc finger, BED-type
SuperFamilySSF1019416.8E-5341416IPR003441NAC domain
SMARTSM006141.5E-8483535IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.614483539IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEADGAAAKL RIINDAVEEV RRRSVRERGW TIEQAMEDMR SGEWERRRRV YRSVQANARL  60
AEVDPWDLPP RFTMPKEPGS SSLRTHSGYW KEKEDEFIGI RSEGGGQGSS SASGSPCYKG  120
VRRTLEFYEH NDTKTDWVIH EYSDLDDYTF VQPGFCGDLQ LHDDIVFRKV FKKTHTITDI  180
VKLGQQRSPR AIDALICEML SMSFEWMEKH TSGCEEAGFE CREFPTPSAD PDGESSDDVW  240
QHFTRINTKH PDEMYAVCHH CDRVLKAPSK NGTSHLRRHR KTKTCTCNNN PSSTPEDLEI  300
LRKLRANRDL YKQGKMERCV ESVVEPCDVP TAGYYTSLLS LKTHQGCWKE IKSNDKLIAI  360
RIGQLPVPQY AGLKRTFQFH PDNGTKMDCI MLEYHLVDEY NTHDLLLEGI MVFRKVIQVF  420
KDAIKELEKM WNGDDDDKEC YIDEREEEVK ACMSTLLHDC LPGEVPQGDQ SGVRKRKRTG  480
GTEGGSKVWL YFTKIYTTDP KKVYAVCHCC DRCYKGHSKN GTSHLKRHNE TCSSKHRKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.70691e-172callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG480900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807167.10.0uncharacterized protein LOC112885745
TrEMBLA0A2T7EIG90.0A0A2T7EIG9_9POAL; Uncharacterized protein
STRINGPavir.J39504.1.p0.0(Panicum virgatum)