PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG478200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 628aa    MW: 69596.3 Da    PI: 4.9501
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG478200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-1385172197
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv+    +++++ + +p +fa+++ ++   +   + led  g +W+v+l  + ++g   ++ GWk+Fv ++ +  g+f+vF+ + rs 
  Pavir.3KG478200.3.p  85 FFKVM--MGYFSEH-MDIPPPFARTIlDLA--G-SNIYLEDAFGLRWRVRL--CLRDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARSV 166
                          77888..6667777.9**********6333..3.37***************..88999999***********************988888 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v++f
  Pavir.3KG478200.3.p 167 F--TVQMF 172
                          8..77766 PP
2B331.14.2e-105586222997
                          -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          kk++ k ++l+d+  r W v +  + +++   + +GW + +++n+L egD++ F+l+g+ e    ++v+
  Pavir.3KG478200.3.p 558 KKQGRKVVILRDPCMRLWPVVY--QCTPRFSGFITGWVDICRENNLHEGDTCEFELSGNYEL--SFQVC 622
                          45567789**************..56665555667*********************997555..44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-1982175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5282175IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-2182175IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-1783172No hitNo description
SMARTSM010191.3E-1385175IPR003340B3 DNA binding domain
PfamPF023626.9E-1185172IPR003340B3 DNA binding domain
PROSITE profilePS508639.841530625IPR003340B3 DNA binding domain
SMARTSM010190.0048533625IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-13544620IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-11544623No hitNo description
PfamPF023623.9E-8558621IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-11559622IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MMELIEGGAV KKEPEETVVE IDIEGEEAEK VVKRRRRRKK SCDPHQNRAC VDCKKRCARI  60
HGRAASSSPS PSSSKTRPIP AVPSFFKVMM GYFSEHMDIP PPFARTILDL AGSNIYLEDA  120
FGLRWRVRLC LRDGVLSFGH GWKNFVLDHA VSCGEFLVFR QIARSVFTVQ MFAPSAVERL  180
FLCEKNKRQS RKRKPRKKTS CPSSQTEKIS KNCKKKQRTD HHNDLGPKDC QMQDHVFIDD  240
SDLPHSASEL KCSETSGGVP EVEVTEPKED SEPPTRHSDC KAQEVLDGEA EIEDDCRVFE  300
EKESECNARV IQHLVSDATE IEHGDGLNLP TNTDAIGPLA MMDLNGVNID DIFLSADIYE  360
FENDMCNPEA FSVDLNVGGP ITTAQTSGFS GLEDTQQNHF SSIGDDQRFV MPETLSCTEN  420
KQMTDALGTG TGYACVAVNE IDINALPANE PSSFAKENSS SPPADPEVHS SECVLSGCNK  480
DNDLLCCKDG QAERKEVKHD KQQDGQENNS VDIGCGTSES GGVLALAASS SKFCIAVPAP  540
EQTWLELPTR LPVIPRTKKQ GRKVVILRDP CMRLWPVVYQ CTPRFSGFIT GWVDICRENN  600
LHEGDTCEFE LSGNYELSFQ VCVPNFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237KRRRRR
23339RRRRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.163740.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG478200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682894.10.0B3 domain-containing protein Os01g0905400 isoform X2
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A2S3HNX60.0A0A2S3HNX6_9POAL; Uncharacterized protein
STRINGPavir.Ea03523.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-09B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]