PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG478200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 663aa    MW: 73365.3 Da    PI: 5.0532
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG478200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-1385172197
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv+    +++++ + +p +fa+++ ++   +   + led  g +W+v+l  + ++g   ++ GWk+Fv ++ +  g+f+vF+ + rs 
  Pavir.3KG478200.1.p  85 FFKVM--MGYFSEH-MDIPPPFARTIlDLA--G-SNIYLEDAFGLRWRVRL--CLRDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARSV 166
                          77888..6667777.9**********6333..3.37***************..88999999***********************988888 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v++f
  Pavir.3KG478200.1.p 167 F--TVQMF 172
                          8..77766 PP
2B3314.5e-105936572997
                          -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          kk++ k ++l+d+  r W v +  + +++   + +GW + +++n+L egD++ F+l+g+ e    ++v+
  Pavir.3KG478200.1.p 593 KKQGRKVVILRDPCMRLWPVVY--QCTPRFSGFITGWVDICRENNLHEGDTCEFELSGNYEL--SFQVC 657
                          45567789**************..56665555667*********************997555..44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2182175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-1982175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5282175IPR003340B3 DNA binding domain
CDDcd100173.20E-1783172No hitNo description
SMARTSM010191.3E-1385175IPR003340B3 DNA binding domain
PfamPF023627.5E-1185172IPR003340B3 DNA binding domain
PROSITE profilePS508639.841565660IPR003340B3 DNA binding domain
SMARTSM010190.0048568660IPR003340B3 DNA binding domain
SuperFamilySSF1019361.71E-13579655IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-11579658No hitNo description
PfamPF023624.2E-8593656IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-11594657IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MMELIEGGAV KKEPEETVVE IDIEGEEAEK VVKRRRRRKK SCDPHQNRAC VDCKKRCARI  60
HGRAASSSPS PSSSKTRPIP AVPSFFKVMM GYFSEHMDIP PPFARTILDL AGSNIYLEDA  120
FGLRWRVRLC LRDGVLSFGH GWKNFVLDHA VSCGEFLVFR QIARSVFTVQ MFAPSAVERL  180
FLCEKNKRQS RKRKPRKKTS CPSSQTEKIS KNCKKKQRTD HHNDLGPKDC QMQDHVFIDD  240
SDLPHSASEL KCSETSGGVP EVEVTEPKED SEPPTRHSDC KAQEVLDGEA EIEDDCRVFE  300
EKESECNARV IQHLVSDATE IEHGDGLNLP TNTDAIGPLA MMDLNGVNID DIFLSADIYE  360
FENDMCNPEA FSVDLNVGGP ITTAQTSGFS GLEDTQQNHF SSIGDDQRFV MPETLSCTEN  420
KQMTDALGTG TGYACVAVNE IDINALPANE PSSFAKENSS SPPADPEVHS SECVLSGCNK  480
DNDLLCCKDG QAERKEAVKH DKQQDGQGNK QDSTGQNTSE VISSSPKLHD NPHLCQNLHQ  540
TENNSVDIGC GTSESGGVLA LAASSSKFCI AVPAPEQTWL ELPTRLPVIP RTKKQGRKVV  600
ILRDPCMRLW PVVYQCTPRF SGFITGWVDI CRENNLHEGD TCEFELSGNY ELSFQVCVPN  660
FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237KRRRRR
23339RRRRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.163740.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG478200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815832.10.0B3 domain-containing protein Os01g0905400-like
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A3L6RFD70.0A0A3L6RFD7_PANMI; B3 domain-containing protein
STRINGPavir.Ea03523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-09B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]