PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG474700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 173aa    MW: 19697.9 Da    PI: 9.3477
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG474700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.51.5e-117514271128
                  NAM  71 gkrknratksgyWkatgkd.kevlsk.....kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                          g+ + r t+sgyWk++  + k++ s      +              gl++tL fy   +++g+ktdWvmhey++
  Pavir.3KG474700.2.p  75 GSSSLR-TQSGYWKEKEDEfKAIRSDvgggeG--SssasssspsyQGLRRTLEFY---EHNGTKTDWVMHEYNV 142
                          445556.799****777651556555876551..14566777888**********...78999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.4422158IPR003441NAC domain
SuperFamilySSF1019412.22E-1249147IPR003441NAC domain
PfamPF023652.5E-953141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEADGAAAIN DAVEEVRRRS LRERGWTIKQ ATEDMRSGEW ERRRRLYRTL QANAGLAEVD  60
PWDLPPRFAM PKEPGSSSLR TQSGYWKEKE DEFKAIRSDV GGGEGSSSAS SSSPSYQGLR  120
RTLEFYEHNG TKTDWVMHEY NVLNGDRRMW SFVRYSTKNT QIGAPLISRM LT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG474700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807167.12e-59uncharacterized protein LOC112885745
TrEMBLA0A2T7EIF42e-59A0A2T7EIF4_9POAL; Uncharacterized protein
TrEMBLA0A2T7EIG92e-59A0A2T7EIG9_9POAL; Uncharacterized protein
STRINGPavir.J14337.1.p1e-104(Panicum virgatum)