PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG464600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 202aa    MW: 22347.3 Da    PI: 6.3919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG464600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.2e-101261651054
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + RR+riNs++  L+el+P+      kK++ +++L +Av+Y+k L
  Pavir.3KG464600.3.p 126 KMRRERINSRLRILQELIPNG-----KKVDISTMLDEAVQYVKFL 165
                          89*****************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-13114179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.297116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-12117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-8122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-10125170No hitNo description
PfamPF000107.0E-7126165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEAECTSYWR SVDAISEESE MIEHLQSLLW SSNDVNLVPG LCSSNVPYSL PGGSPFCIND  60
NENSALVRSP PYVDVETLAS THGEKVGSKR KGETHKENHG VKGHAAPLEP GGCKKSKASS  120
QSCYAKMRRE RINSRLRILQ ELIPNGKKVD ISTMLDEAVQ YVKFLHMQIK LLSSDELWMY  180
SPLAYDSVNM GMHLNSSSVQ E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG464600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809609.11e-119transcription factor bHLH84-like
TrEMBLA0A2S3HE591e-118A0A2S3HE59_9POAL; Uncharacterized protein
TrEMBLA0A2T7EHD81e-118A0A2T7EHD8_9POAL; Uncharacterized protein
STRINGPavir.Ca02388.1.p1e-144(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-35bHLH family protein